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AT3G25130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3J4eggNOG:ENOG410YY6XEMBL:AB026647EMBL:CP002686EnsemblPlants:AT3G25130EnsemblPlants:AT3G25130.1entrez:822104
GeneID:822104GO:GO:0005886GO:GO:0016021Gramene:AT3G25130.1hmmpanther:PTHR36760hmmpanther:PTHR36760:SF1HOGENOM:HOG000090441
KEGG:ath:AT3G25130ncoils:CoilOMA:GRFYNANPhylomeDB:Q9LSG4Proteomes:UP000006548RefSeq:NP_189149.2TAIR:AT3G25130
TMHMM:TMhelixUniGene:At.43070UniProt:Q9LSG4
Coordinates (TAIR10) chr3:+:9152434..9153654
Molecular Weight (calculated) 46524.10 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.55
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MSELALSSQE ESPSSNKIGL SSLLLSDFHL FCSFILTHPF YFSYLLFFSP YIFKILSFLS PLFVTTTLLL LALLSTLHVQ DTCLDSESLE TQPSFLFSFC
101: SKLGSVLEHK FDVNNEGFKS LEELEAYKMV VEACSMECAS ENEICSDELT FVDKFCSHES TVSESLTDET LEEQVEIQPL KFEDVIVLEK EEETKKCEKE
201: EVEEQKVKHK SDVVLDNREE PTKEESKAQK VDLVGDSNNE SYDLPKLSNF LGEGEGKRNV VTKNEEEDNV SLQSFGSMRK EKEWRRTLAC KLFEERHNAD
301: VGQGMDQLWE TYETQTEKKQ QTEEEKKKLK KKTKSMMKTK SIEKEVIVEE EDDDGIDHQQ LCCLQALKFS TGKMHLGIAR PNLLKLSKAF KGIGRFYNAN
401: KHSKKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)