AT3G25060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 38577 Blast hits to 13574 proteins in 230 species: Archae - 0; Bacteria - 4; Metazoa - 32; Fungi - 92; Plants - 37972; Viruses - 0; Other Eukaryotes - 477 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9128516..9130321 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67061.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.60 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 601 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVQTKHFCML HRTLLCPKRI KFLQSISKLK RHITQIHAFV ISTGNLLNGS SISRDLIASC GRIGEISYAR KVFDELPQRG VSVYNSMIVV YSRGKNPDEV 101: LRLYDQMIAE KIQPDSSTFT MTIKACLSGL VLEKGEAVWC KAVDFGYKND VFVCSSVLNL YMKCGKMDEA EVLFGKMAKR DVICWTTMVT GFAQAGKSLK 201: AVEFYREMQN EGFGRDRVVM LGLLQASGDL GDTKMGRSVH GYLYRTGLPM NVVVETSLVD MYAKVGFIEV ASRVFSRMMF KTAVSWGSLI SGFAQNGLAN 301: KAFEAVVEMQ SLGFQPDLVT LVGVLVACSQ VGSLKTGRLV HCYILKRHVL DRVTATALMD MYSKCGALSS SREIFEHVGR KDLVCWNTMI SCYGIHGNGQ 401: EVVSLFLKMT ESNIEPDHAT FASLLSALSH SGLVEQGQHW FSVMINKYKI QPSEKHYVCL IDLLARAGRV EEALDMINSE KLDNALPIWV ALLSGCINHR 501: NLSVGDIAAN KILQLNPDSI GIQTLVSNFF ATANKWKEVA KVRKLMRNGA MEKVPGYSAI EVNGELRTFL MEDLSHHEHY HMLQVLRNLK TEIRDVCSGV 601: E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)