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AT3G25040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endoplasmic reticulum retention defective 2B
Curator
Summary (TAIR10)
Encodes ERD2b. a homolog of the yeast endoplasmic reticulum retention receptor ERD2. Mutations in ERD2b compromise EFR but not FLS2 signaling.
Computational
Description (TAIR10)
endoplasmic reticulum retention defective 2B (ERD2B); FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, protein transport; LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G29330.1); Has 912 Blast hits to 910 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 322; Fungi - 187; Plants - 229; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5196eggNOG:KOG3106EMBL:AJ271475EMBL:AP000412
EMBL:AY063921EMBL:AY086280EMBL:AY142602EMBL:CP002686
EnsemblPlants:AT3G25040EnsemblPlants:AT3G25040.1entrez:822095GeneID:822095
Genevisible:Q8VWI1GO:GO:0000139GO:GO:0005789GO:GO:0005794
GO:GO:0006621GO:GO:0010204GO:GO:0015031GO:GO:0016021
GO:GO:0016192GO:GO:0046923Gramene:AT3G25040.1hmmpanther:PTHR10585
hmmpanther:PTHR10585:SF29HOGENOM:HOG000231400InParanoid:Q8VWI1InterPro:IPR000133
KEGG:ath:AT3G25040KO:K10949OMA:INWIWRFPANTHER:PTHR10585
PaxDb:Q8VWI1Pfam:PF00810Pfam:Q8VWI1PhylomeDB:Q8VWI1
PRIDE:Q8VWI1PRINTS:PR00660PRO:PR:Q8VWI1PROSITE:PS00951
PROSITE:PS00952ProteinModelPortal:Q8VWI1Proteomes:UP000006548Reactome:R-ATH-6807878
RefSeq:NP_566758.1scanprosite:PS00951scanprosite:PS00952STRING:3702.AT3G25040.1
TAIR:AT3G25040tair10-symbols:ERD2BTMHMM:TMhelixUniGene:At.27421
UniProt:Q8VWI1
Coordinates (TAIR10) chr3:+:9124479..9126051
Molecular Weight (calculated) 25564.50 Da
IEP (calculated) 9.58
GRAVY (calculated) 0.42
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MNIFRLAGDM THLASVLVLL LKIHTIKSCA GVSLKTQELY AIVFATRYLD IFTSFVSLYN TSMKLVFLGS SFSIVWYMKY HKAVHRTYDR EQDTFRHWFL
101: VLPCFLLALL IHEKFTFLEV LWTSSLYLEA VAILPQLVLL QRTRNIDNLT GQYIFLLGGY RGLYILNWIY RYFTEPHFVH WITWIAGFVQ TLLYADFFYY
201: YFLSWKNNKK LQLPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)