AT3G25020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 42 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 42 (RLP42); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 101819 Blast hits to 28851 proteins in 1081 species: Archae - 42; Bacteria - 7146; Metazoa - 22681; Fungi - 1243; Plants - 63183; Viruses - 32; Other Eukaryotes - 7492 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9116868..9119540 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98444.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||
| Length | 890 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKSLLRLTF LLLLLLSCVS PSSFFTFNNP AEGPGACGPH QIQAFTQFKN EFDTRACNHS DPWNGVWCDN STGAVTMLQL RACLSGTLKP NSSLFQFHHL 101: RSLLLPHNNF TSSSISSKFG MLNNLEVLSL SSSGFLAQVP FSFSNLSMLS ALDLSKNELT GSLSFVRNLR KLRVLDVSYN HFSGILNPNS SLFELHHLIY 201: LNLRYNNFTS SSLPYEFGNL NKLEVLDVSS NSFFGQVPPT ISNLTQLTEL YLPLNDFTGS LPLVQNLTKL SILHLFGNHF SGTIPSSLFT MPFLSSIYLN 301: KNNLSGSIEV PNSSSSSRLE HLYLGKNHLG KILEPIAKLV NLKELDLSFL NTSHPIDLSL FSSLKSLLLL DLSGDWISKA SLTLDSYIPS TLEVLRLEHC 401: DISEFPNVFK TLHNLEYIAL SNNRISGKFP EWLWSLPRLS SVFITDNLLT GFEGSSEVLV NSSVQILSLD TNSLEGALPH LPLSINYFSA IDNRFGGDIP 501: LSICNRSSLD VLDLSYNNFS GQIPPCLSNL LYLKLRKNNL EGSIPDKYYV DTPLRSFDVG YNRLTGKLPR SLINCSALQF LSVDHNGIKD TFPFYLKALP 601: KLQVLLLSSN EFYGPLSPPN QGPLGFPELR ILEIAGNKLT GSLPPDFFVN WKASSHTMNE DLGLYMVYSK VIFGNYHLTY YETIDLRYKG LSMEQENVLT 701: SSATIDLSGN RLEGEIPESL GLLKALIALN LSNNAFTGHI PLSLANLKKI ESLDLSSNQL SGTIPNGLGT LSFLAYMNVS HNQLNGEIPQ GTQITGQPKS 801: SFEGNAGLCG FPLQESCFGT NAPPAQKPKE EEEAEEDEQE LNWKAVAIGY GVGVLLGLAI AQLIASYKPE WLVCLVKSRN PLRSFFGFEY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)