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AT3G24800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proteolysis 1
Curator
Summary (TAIR10)
Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis).
Computational
Description (TAIR10)
proteolysis 1 (PRT1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18660.1); Has 4154 Blast hits to 3358 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 2882; Fungi - 341; Plants - 509; Viruses - 3; Other Eukaryotes - 419 (source: NCBI BLink).
Protein Annotations
BioGrid:7409EC:6.3.2.-eggNOG:ENOG410Y7D6eggNOG:KOG4159eggNOG:KOG4582EMBL:AB028609EMBL:AJ224306
EMBL:AJ224307EMBL:AY080799EMBL:AY087139EMBL:AY114077EMBL:CP002686EnsemblPlants:AT3G24800EnsemblPlants:AT3G24800.1
entrez:822078Gene3D:3.30.40.10GeneID:822078Genevisible:Q8LBL5GO:GO:0005737GO:GO:0008270GO:GO:0016874
GO:GO:0061630GO:GO:0071596Gramene:AT3G24800.1hmmpanther:PTHR15898hmmpanther:PTHR15898:SF1HOGENOM:HOG000030197InParanoid:Q8LBL5
InterPro:IPR000433InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907InterPro:IPR027370KEGG:ath:AT3G24800OMA:PDEFQCC
PaxDb:Q8LBL5Pfam:PF00569Pfam:PF13445Pfam:PF13920Pfam:Q8LBL5Pfscan:PS50089Pfscan:PS50135
PhylomeDB:Q8LBL5PIR:T52193PRIDE:Q8LBL5PRO:PR:Q8LBL5PROSITE:PS00518PROSITE:PS01357PROSITE:PS50089
PROSITE:PS50135ProteinModelPortal:Q8LBL5Proteomes:UP000006548RefSeq:NP_189124.1scanprosite:PS00518scanprosite:PS01357SMART:SM00184
SMART:SM00291SMR:Q8LBL5STRING:3702.AT3G24800.1SUPFAM:SSF57850TAIR:AT3G24800tair10-symbols:PRT1UniGene:At.77
UniPathway:UPA00143UniProt:Q8LBL5
Coordinates (TAIR10) chr3:+:9055653..9057795
Molecular Weight (calculated) 45939.30 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.53
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETMKDITM KNDESQEEEI PDQFLCCVCL ELLYKPIVLS CGHLSCFWCV HKSMNGFRES HCPICRDPYV HFPSVCQKLY FLLKKMYPLA HKKREEQVLK
101: EEQERECFSP QIDLVLDLSV CSGDSLNVSD KQKVEECSNA ANLLSSSSSR GDIPCIPKNQ EPTDAKALNV HENELLKDNK VSKQISKDDL LCSACKELLV
201: RPVVLNCGHV YCEGCVVDMA EESEKIKCQE CNVCDPRGFP KVCLILEQLL EENFPEEYNS RSSKVQKTLA HNSKGNIQSY LKEGPSLSND NNNDDPWLAN
301: PGSNVHFGAG CDSCGVYPII GDRYRCKDCK EEIGYDLCKD CYETPSKVPG RFNQQHTPDH RLELARSPQV LINFNSIGIL LGPVISNEGM DTDEGEEGPP
401: GSSNESSSTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)