suba logo
AT3G24760.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.944
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Kelch repeat-containing F-box family protein (TAIR:AT1G23390.1); Has 250 Blast hits to 250 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:7405eggNOG:ENOG410IISWeggNOG:ENOG4111ZM5EMBL:AB028609EMBL:CP002686EnsemblPlants:AT3G24760EnsemblPlants:AT3G24760.1
entrez:822074Gene3D:2.120.10.80GeneID:822074Genevisible:Q3EB08Gramene:AT3G24760.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF95
HOGENOM:HOG000112536InParanoid:Q3EB08InterPro:IPR001810InterPro:IPR015915iPTMnet:Q3EB08KEGG:ath:AT3G24760OMA:FSEIAIM
PaxDb:Q3EB08Pfam:PF00646Pfam:Q3EB08Pfscan:PS50181PhylomeDB:Q3EB08PRIDE:Q3EB08PRO:PR:Q3EB08
PROSITE:PS50181ProteinModelPortal:Q3EB08Proteomes:UP000006548RefSeq:NP_189120.1SUPFAM:0052715SUPFAM:SSF81383TAIR:AT3G24760
UniGene:At.24730UniProt:Q3EB08
Coordinates (TAIR10) chr3:+:9040108..9041259
Molecular Weight (calculated) 42674.60 Da
IEP (calculated) 5.60
GRAVY (calculated) -0.03
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDNNPEIES STFNNLNIDV TESILYHLPI PSLVRFTLVS KQWRSLITSL PPSPSPSPSS PPWLFLFGIH NTSSFHNQSF AFDPLSNTWL RLPPSSSSSD
101: HLVGSNRFLF TTAPRFSFSP ILKPNWRFTS PVRFPRINPL LTVFTTLSNS SKLILVGGSS RIGGLVDIEE RLAVQIYDPV LDSWELCSPL PADFRSGQDH
201: QTLTSALFKR RFYVFDNYSC FISSFCLDSY TWSDVQTLKP PGLSFAYLNS CNGMLVLGGM CGFSFNLWSI EEGSMEFSEI AVMPEDLLFG LVDSDDEDDK
301: FRSLKCAGSG NLVYVFNDDC HKKFPACVCE IGGGENGICS WRRVPCLPSP VNKFHKVVSF CSTVSITDVF HPEEARIGGS IRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)