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AT3G24740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1644)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G68140.3); Has 253 Blast hits to 248 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJEGeggNOG:ENOG410YA0NEMBL:AB028609EMBL:AY075595EMBL:AY094055EMBL:CP002686EnsemblPlants:AT3G24740
EnsemblPlants:AT3G24740.1EnsemblPlants:AT3G24740.2entrez:822072Gene3D:3.30.40.10GeneID:822072Gramene:AT3G24740.1Gramene:AT3G24740.2
hmmpanther:PTHR31197hmmpanther:PTHR31197:SF2HOGENOM:HOG000030038IntAct:Q9LRY5InterPro:IPR012866InterPro:IPR013083KEGG:ath:AT3G24740
OMA:LHSESANPfam:PF07800PhylomeDB:Q9LRY5Proteomes:UP000006548RefSeq:NP_001030761.1RefSeq:NP_189118.1STRING:3702.AT3G24740.1
TAIR:AT3G24740UniGene:At.27920UniProt:Q9LRY5
Coordinates (TAIR10) chr3:+:9032397..9033461
Molecular Weight (calculated) 40108.10 Da
IEP (calculated) 8.43
GRAVY (calculated) -1.07
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVKRKLST ESDVHALHKE LDEVSCPVCM DHPHNAVLLL CSSHDKGCRS YICDTSYRHS NCLDRFKKLH SESANDPTPE ANLASREHNN ESLYEHGTAS
101: RSSFHRESGN RGSSWDSESL RRRRRVEEEV ESEDITNLKC PLCRGTVLGW KVVEEVRTYL DHKNRSCSRE SCSFTGNYQD LRRHARRTHP TTRPSDTDPS
201: RERAWRRLEN QREYGDIVSA IRSAMPGAVV VGDYVIENGD RFAGERETGN GGSDLWTTLL LFQMIGSLDN GGSSASGSGG GSRSHRSRAW RNHRRSSSDR
301: PYLWGENLLG LQDERNNNDD EEFRLQNDAG GASTPVPRRR RRFGRPRSSG NHPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)