suba logo
AT3G24670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13210.2); Has 1600 Blast hits to 1590 proteins in 262 species: Archae - 0; Bacteria - 665; Metazoa - 0; Fungi - 224; Plants - 703; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G24670-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866
eggNOG:ENOG410IGFPEMBL:AK118210EMBL:AP000740EMBL:CP002686
EnsemblPlants:AT3G24670EnsemblPlants:AT3G24670.1entrez:822063Gene3D:2.160.20.10
GeneID:822063Genevisible:Q9LJ42GO:GO:0030570GO:GO:0045490
GO:GO:0046872Gramene:AT3G24670.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF19
HOGENOM:HOG000237948InParanoid:Q9LJ42InterPro:IPR002022InterPro:IPR011050
InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT3G24670
KO:K01728OMA:GFFSCATPaxDb:Q9LJ42Pfam:PF00544
Pfam:Q9LJ42PhylomeDB:Q9LJ42PRIDE:Q9LJ42PRINTS:PR00807
PRO:PR:Q9LJ42ProteinModelPortal:Q9LJ42Proteomes:UP000006548RefSeq:NP_189110.1
SMART:SM00656SMR:Q9LJ42STRING:3702.AT3G24670.1SUPFAM:SSF51126
TAIR:AT3G24670UniGene:At.43520UniPathway:UPA00545UniProt:Q9LJ42
Coordinates (TAIR10) chr3:-:9006205..9008801
Molecular Weight (calculated) 48764.10 Da
IEP (calculated) 8.97
GRAVY (calculated) -0.27
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIFSRSFLA LSTTLIILAL CINSSTMAQE TEDLNSHSSS NSSTANKLPN DDGAWNEHAV KNPEEVAAMV DMKIKNSTER RRLGFFSCAT GNPIDDCWRC
101: DRNWHLRRKR LANCAIGFGR NAIGGRDGRY YVVTDPSDHD AVNPRPGTLR HAVIQDRPLW IVFKRDMVIT LTQELIMNSF KTIDGRGVNV AIAGGACITI
201: QYVTNIIIHG INVHDCRRTG NAMVRSSPSH YGWRTMADGD AISIFGSSHI WIDHNSLSNC ADGLIDAIMG STAITISNNY MTHHNEVMLM GHSDSYTRDK
301: LMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWVMY AIGGSANPTI NSQGNRFLAP GNPFAKEVTK RVGSWQGEWK QWNWRSQGDL MLNGAYFTKS
401: GAAAPASYAR ASSLGAKPAS VVSMLTYSSG ALKCRIGMRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)