suba logo
AT3G24620.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RHO guanyl-nucleotide exchange factor 8
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational
Description (TAIR10)
RHO guanyl-nucleotide exchange factor 8 (ROPGEF8); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 9 (TAIR:AT4G13240.1); Has 311 Blast hits to 307 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 309; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:7389eggNOG:ENOG410IH1BeggNOG:ENOG410YG86EMBL:AB020746EMBL:CP002686EMBL:DQ446693EnsemblPlants:AT3G24620
EnsemblPlants:AT3G24620.1entrez:822058EvolutionaryTrace:Q9LV40GeneID:822058Genevisible:Q9LV40GO:GO:0005085GO:GO:0005089
GO:GO:0005886GO:GO:0042802GO:GO:0043547Gramene:AT3G24620.1hmmpanther:PTHR33101hmmpanther:PTHR33101:SF10HOGENOM:HOG000238290
InParanoid:Q9LV40IntAct:Q9LV40InterPro:IPR005512iPTMnet:Q9LV40KEGG:ath:AT3G24620MINT:MINT-6803377OMA:RRMLYFQ
PaxDb:Q9LV40PDB:2NTXPDB:2NTYPDB:2WBLPDBsum:2NTXPDBsum:2NTYPDBsum:2WBL
Pfam:PF03759Pfam:Q9LV40Pfscan:PS51334PhylomeDB:Q9LV40PRIDE:Q9LV40PRO:PR:Q9LV40PROSITE:PS51334
ProteinModelPortal:Q9LV40Proteomes:UP000006548RefSeq:NP_189105.1SMR:Q9LV40STRING:3702.AT3G24620.1TAIR:AT3G24620tair10-symbols:ATROPGEF8
tair10-symbols:ROPGEF8UniGene:At.53476UniProt:Q9LV40
Coordinates (TAIR10) chr3:-:8980695..8982793
Molecular Weight (calculated) 58744.40 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.62
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)