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AT3G24520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : heat shock transcription factor C1
Curator
Summary (TAIR10)
member of Heat Stress Transcription Factor (Hsf) family
Computational
Description (TAIR10)
heat shock transcription factor C1 (HSFC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Interferon induced 35kDa, N-terminal (InterPro:IPR009938), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 2230 Blast hits to 2217 proteins in 240 species: Archae - 2; Bacteria - 4; Metazoa - 382; Fungi - 481; Plants - 788; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).
Protein Annotations
BioGrid:7378eggNOG:COG5169eggNOG:KOG0627EMBL:AB020746EMBL:AY056111EMBL:AY072614EMBL:CP002686
EnsemblPlants:AT3G24520EnsemblPlants:AT3G24520.1entrez:822047Gene3D:1.10.10.10GeneID:822047Genevisible:Q9LV52GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0043565Gramene:AT3G24520.1hmmpanther:PTHR10015hmmpanther:PTHR10015:SF187HOGENOM:HOG000272704
InParanoid:Q9LV52IntAct:Q9LV52InterPro:IPR000232InterPro:IPR011991InterPro:IPR027725KEGG:ath:AT3G24520KO:K09419
ncoils:CoilOMA:NVIAPFIPANTHER:PTHR10015PaxDb:Q9LV52Pfam:PF00447Pfam:Q9LV52PhylomeDB:Q9LV52
PRIDE:Q9LV52PRINTS:PR00056PRO:PR:Q9LV52PROSITE:PS00434ProteinModelPortal:Q9LV52Proteomes:UP000006548Reactome:R-ATH-3371453
Reactome:R-ATH-3371511Reactome:R-ATH-3371568Reactome:R-ATH-3371571RefSeq:NP_189095.1scanprosite:PS00434SMART:SM00415SMR:Q9LV52
STRING:3702.AT3G24520.1SUPFAM:SSF46785TAIR:AT3G24520tair10-symbols:AT-HSFC1tair10-symbols:HSFC1UniGene:At.25607UniGene:At.73128
UniProt:Q9LV52
Coordinates (TAIR10) chr3:+:8941455..8942531
Molecular Weight (calculated) 37716.20 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.81
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)