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AT3G24490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein; CONTAINS InterPro DOMAIN/s: MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G14180.1); Has 2180 Blast hits to 1768 proteins in 193 species: Archae - 0; Bacteria - 86; Metazoa - 661; Fungi - 121; Plants - 408; Viruses - 35; Other Eukaryotes - 869 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AB020746EMBL:CP002686EnsemblPlants:AT3G24490EnsemblPlants:AT3G24490.1entrez:822039
GeneID:822039GO:GO:0003700GO:GO:0006355Gramene:AT3G24490.1hmmpanther:PTHR31307hmmpanther:PTHR31307:SF8HOGENOM:HOG000091132
KEGG:ath:AT3G24490ncoils:CoilOMA:NEDWNEVPfam:PF13837PhylomeDB:Q9LV59Proteomes:UP000006548RefSeq:NP_189092.1
TAIR:AT3G24490UniGene:At.37516UniProt:Q9LV59
Coordinates (TAIR10) chr3:+:8911022..8912023
Molecular Weight (calculated) 39085.00 Da
IEP (calculated) 4.37
GRAVY (calculated) -1.26
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)