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AT3G24340.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chromatin remodeling 40
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
chromatin remodeling 40 (chr40); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 31 (TAIR:AT1G05490.1); Has 24041 Blast hits to 18768 proteins in 2163 species: Archae - 181; Bacteria - 8994; Metazoa - 4892; Fungi - 4248; Plants - 1616; Viruses - 198; Other Eukaryotes - 3912 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2152-MONOMERBioGrid:7355EC:3.6.4.-eggNOG:COG0553
eggNOG:KOG0390EMBL:AP000382EMBL:CP002686EnsemblPlants:AT3G24340
EnsemblPlants:AT3G24340.1entrez:822023Gene3D:3.40.50.300GeneID:822023
Genevisible:Q9LK10GO:GO:0003677GO:GO:0004386GO:GO:0005524
GO:GO:0005634Gramene:AT3G24340.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF748
HOGENOM:HOG000153033InParanoid:Q9LK10InterPro:IPR000330InterPro:IPR001650
InterPro:IPR014001InterPro:IPR027417KEGG:ath:AT3G24340KO:K10875
OMA:RFGCEEPPaxDb:Q9LK10Pfam:PF00176Pfam:PF00271
Pfam:Q9LK10Pfscan:PS51192Pfscan:PS51194PhylomeDB:Q9LK10
PRIDE:Q9LK10PRO:PR:Q9LK10PROSITE:PS51192PROSITE:PS51194
ProteinModelPortal:Q9LK10Proteomes:UP000006548RefSeq:NP_189077.1SMART:SM00487
SMART:SM00490STRING:3702.AT3G24340.1SUPFAM:SSF52540TAIR:AT3G24340
tair10-symbols:chr40UniGene:At.37544UniProt:Q9LK10
Coordinates (TAIR10) chr3:-:8832085..8835722
Molecular Weight (calculated) 128350.00 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.68
Length 1132 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDMTSCVARR TRSRTESYLN SILNKSKGIS GEEEDQSLGC VNSRTEKRRV NMRDACSPSP RKKKRRRRKD DDDDVVFVRT EYPEGKRDDE NVGSTSGNLQ
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)