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AT3G24315.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.524
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec20 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AtSec20; CONTAINS InterPro DOMAIN/s: Sec20 (InterPro:IPR005606); Has 291 Blast hits to 291 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 95; Plants - 46; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JR1VeggNOG:ENOG4111K1QEMBL:BT025252EMBL:CP002686EnsemblPlants:AT3G24315EnsemblPlants:AT3G24315.1entrez:822020
GeneID:822020GO:GO:0016021Gramene:AT3G24315.1hmmpanther:PTHR12825hmmpanther:PTHR12825:SF0InterPro:IPR005606KEGG:ath:AT3G24315
KO:K08497ncoils:CoilOMA:TTRARHNPfam:PF03908Proteomes:UP000006548RefSeq:NP_566746.1STRING:3702.AT3G24315.1
TAIR:AT3G24315tair10-symbols:AtSec20TMHMM:TMhelixUniGene:At.37549UniProt:Q1LYX4
Coordinates (TAIR10) chr3:-:8820599..8822445
Molecular Weight (calculated) 32839.30 Da
IEP (calculated) 9.29
GRAVY (calculated) -0.43
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEVVVEVEK TKREWEEAYE KTIGHIISIQ QYGKSRRGDG GEEKFSLQRL NGLAQDGLSL LNSLQFNLDL LAPQLPSDDQ VQSTQSLLET WKNQYHSLRV
101: NLRSANLQAK DNMRKAAQEE RELLLGGGTE STVLRRKRQA NAGVTSDAES ITESLRRSRQ LMVQEVERST NTLVAFDEST GVLKKAESEY KGHRSLLSRT
201: RNLLSTMQRQ DVIDRIILIV GFSLFVFAVV YVVSKRIGIL KLQRMATAAI KAQLAGKAAN GVGDDVMPLG QQFDGNTVPT VNIPLQQRMH DEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)