AT3G24315.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.944 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sec20 family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AtSec20; CONTAINS InterPro DOMAIN/s: Sec20 (InterPro:IPR005606); Has 291 Blast hits to 291 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 95; Plants - 46; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8820599..8822445 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32839.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.29 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||
| Length | 293 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEVVVEVEK TKREWEEAYE KTIGHIISIQ QYGKSRRGDG GEEKFSLQRL NGLAQDGLSL LNSLQFNLDL LAPQLPSDDQ VQSTQSLLET WKNQYHSLRV 101: NLRSANLQAK DNMRKAAQEE RELLLGGGTE STVLRRKRQA NAGVTSDAES ITESLRRSRQ LMVQEVERST NTLVAFDEST GVLKKAESEY KGHRSLLSRT 201: RNLLSTMQRQ DVIDRIILIV GFSLFVFAVV YVVSKRIGIL KLQRMATAAI KAQLAGKAAN GVGDDVMPLG QQFDGNTVPT VNIPLQQRMH DEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)