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AT3G24300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ammonium transporter 1;3
Curator
Summary (TAIR10)
Encodes a plasma membrane localized ammonium transporter.
Computational
Description (TAIR10)
ammonium transporter 1;3 (AMT1;3); CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;5 (TAIR:AT3G24290.1); Has 11505 Blast hits to 11486 proteins in 2067 species: Archae - 224; Bacteria - 4696; Metazoa - 434; Fungi - 433; Plants - 469; Viruses - 0; Other Eukaryotes - 5249 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G24300-MONOMERBioCyc:MetaCyc:AT3G24300-MONOMERBioGrid:7350eggNOG:COG0004
eggNOG:KOG0682EMBL:AF083035EMBL:AK227798EMBL:AP000382
EMBL:CP002686EnsemblPlants:AT3G24300EnsemblPlants:AT3G24300.1entrez:822018
Gene3D:1.10.3430.10GeneID:822018Genevisible:Q9SQH9GO:GO:0005886
GO:GO:0005887GO:GO:0006995GO:GO:0008519GO:GO:0010311
GO:GO:0015695GO:GO:0015696GO:GO:0019740GO:GO:0080181
Gramene:AT3G24300.1gramene_pathway:PWY-5986hmmpanther:PTHR11730hmmpanther:PTHR11730:SF39
HOGENOM:HOG000017735InParanoid:Q9SQH9InterPro:IPR001905InterPro:IPR018047
InterPro:IPR024041InterPro:IPR029020iPTMnet:Q9SQH9KEGG:ath:AT3G24300
KO:K03320OMA:CGIWGGIPANTHER:PTHR11730PaxDb:Q9SQH9
Pfam:PF00909Pfam:Q9SQH9PhylomeDB:Q9SQH9PRIDE:Q9SQH9
PRO:PR:Q9SQH9PROSITE:PS01219ProteinModelPortal:Q9SQH9Proteomes:UP000006548
RefSeq:NP_189073.1SABIO-RK:Q9SQH9scanprosite:PS01219SMR:Q9SQH9
STRING:3702.AT3G24300.1SUPFAM:0044218SUPFAM:SSF111352TAIR:AT3G24300
tair10-symbols:AMT1;3tair10-symbols:ATAMT1;3TIGRfam:TIGR00836TIGRFAMs:TIGR00836
TMHMM:TMhelixUniGene:At.5885UniProt:Q9SQH9
Coordinates (TAIR10) chr3:-:8805858..8807354
Molecular Weight (calculated) 53301.10 Da
IEP (calculated) 7.24
GRAVY (calculated) 0.36
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGAITCSAA DLATLLGPNA TAAADYICGQ LGTVNNKFTD AAFAIDNTYL LFSAYLVFAM QLGFAMLCAG SVRAKNTMNI MLTNVLDAAA GGLFYYLFGY
101: AFAFGGSSEG FIGRHNFALR DFPTPTADYS FFLYQWAFAI AAAGITSGSI AERTQFVAYL IYSSFLTGFV YPVVSHWFWS PDGWASPFRS ADDRLFSTGA
201: IDFAGSGVVH MVGGIAGLWG ALIEGPRRGR FEKGGRAIAL RGHSASLVVL GTFLLWFGWY GFNPGSFTKI LVPYNSGSNY GQWSGIGRTA VNTTLSGCTA
301: ALTTLFGKRL LSGHWNVTDV CNGLLGGFAA ITAGCSVVEP WAAIVCGFMA SVVLIGCNKL AELVQYDDPL EAAQLHGGCG AWGLIFVGLF AKEKYLNEVY
401: GATPGRPYGL FMGGGGKLLG AQLVQILVIV GWVSATMGTL FFILKRLNLL RISEQHEMQG MDMTRHGGFA YIYHDNDDES HRVDPGSPFP RSATPPRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)