suba logo
AT3G24260.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28870.1); Has 220 Blast hits to 218 proteins in 65 species: Archae - 7; Bacteria - 6; Metazoa - 43; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5602eggNOG:KOG4204EMBL:AP000382EMBL:CP002686EnsemblPlants:AT3G24260EnsemblPlants:AT3G24260.1entrez:822014
GeneID:822014Gramene:AT3G24260.1HOGENOM:HOG000153034InterPro:IPR013194KEGG:ath:AT3G24260ncoils:CoilOMA:MIPRIRI
Pfam:PF08295PhylomeDB:Q9LK19Proteomes:UP000006548RefSeq:NP_189069.1SMART:SM00761STRING:3702.AT3G24260.1TAIR:AT3G24260
UniGene:At.65146UniProt:Q9LK19
Coordinates (TAIR10) chr3:-:8793837..8794961
Molecular Weight (calculated) 43856.80 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.96
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MADADELMKT NGVKTQSSSV QTRLRSSVRL LRNPELTREL RRLKDNNLNR KIDHDEKPEE NPILLNEPKM IPRIRIVYKP KDDVERKMKD RLEAKQKLTE
101: LLKAIEERLT RSELRVYTCL CKDFKSHRID YSQFVKSLQR LIDKYKNLYQ RFVDIAYGHG EDEAGTRVKV DDNPQDTESD KIKLEGKGKR GMLPPKESDQ
201: PERPLKKRRK TERATPNYKL IPKEEQTPVS STVLNNTWVV NSYDIQAQKN LTDIEKDMYN WEDQMFELDM LVGFLTSAAK NAEEVINGER DLKDLGGKFY
301: RCAENLYGRD MLEIVKENHQ RVLPAILNRL NQKLREVTLV RERLKPVLKQ TIEKLSTRQR GSTAQESQVK TRTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)