AT3G24210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G04780.1); Has 792 Blast hits to 708 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 393; Fungi - 3; Plants - 340; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8753712..8755627 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67830.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.51 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||
| Length | 607 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENVDVSKYI HSSVHKAVAS KDYVGLRAIL SSLPKPKDPC EIQTEAASLS EEAKSDTISA VIDRRDVPSR DTPLHLAVKL CDSTSVEMLM VAGADWTLQN 101: EDGWNALQEA VCSRQEAIAM IIVRHYQPLA WAKWCRRLPR LIATMSKMKD FYLEMSFHFE SSVVPFVSKV APSDTYKVWK VGSNLRADMT MAGFDGFKIQ 201: RSDQSILFLG DGSEDGEVAR GSLYMVNHKD KEVMNALDGA CGVPSEEEVR KEVAAMCKSN IFRPGIDVTQ AVLSPQTNWR RQEKSEMVGP WKAKVYEMNN 301: VVVSVKSRKV PGSLAVEGGD DDICDVLTDE EQKQLEDALK LDLPDFPNVN GENGFIVHHQ EDHVEANKKA EKKGWLGGWR KKETKQEKQI QYAPPRSSLC 401: VNEKVSNLLG ESNQIKPGRH SVDNEHYRKP KALVSDKTRH ESEYKKGLRP VLWLSPNFPL QTEELLPLLD ILANKVKAIR RLRELLTTKL PSGTFPVKVA 501: IPVVPTIKVL VTFTKFEEIE PVDEFKTPLS SPTSSGYESP AAATTDFTNS SSSSSWFRRS RSNKDGGSSK SKTLQDPFAI PTGYTWVSLE SKKRKPKKGG 601: KKTEQVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)