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AT3G24140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell.
Computational
Description (TAIR10)
FAMA (FMA); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G72210.1); Has 1771 Blast hits to 1747 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 80; Plants - 1654; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
BioGrid:7332eggNOG:ENOG410IIZKeggNOG:ENOG410YBHAEMBL:AB028621EMBL:AF488624EMBL:AK221324EMBL:BT028961
EMBL:CP002686EnsemblPlants:AT3G24140EnsemblPlants:AT3G24140.1entrez:822000Gene3D:4.10.280.10GeneID:822000Genevisible:Q56YJ8
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0010052GO:GO:0010377GO:GO:0045597
GO:GO:0045893GO:GO:0051782Gramene:AT3G24140.1hmmpanther:PTHR11514hmmpanther:PTHR11514:SF61HOGENOM:HOG000238962InParanoid:Q56YJ8
IntAct:Q56YJ8InterPro:IPR011598KEGG:ath:AT3G24140OMA:HANTNISPaxDb:Q56YJ8Pfam:PF00010Pfam:Q56YJ8
Pfscan:PS50888PhylomeDB:Q56YJ8PRIDE:Q56YJ8PRO:PR:Q56YJ8PROSITE:PS50888ProteinModelPortal:Q56YJ8Proteomes:UP000006548
RefSeq:NP_189056.2SMART:SM00353SMR:Q56YJ8STRING:3702.AT3G24140.1SUPFAM:SSF47459TAIR:AT3G24140tair10-symbols:FMA
UniGene:At.37586UniProt:Q56YJ8
Coordinates (TAIR10) chr3:-:8715525..8717772
Molecular Weight (calculated) 46410.40 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.69
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)