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AT3G23920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-amylase 1
Curator
Summary (TAIR10)
Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3.
Computational
Description (TAIR10)
beta-amylase 1 (BAM1); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: response to water deprivation, starch catabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: chloroplast beta-amylase (TAIR:AT4G17090.1); Has 845 Blast hits to 843 proteins in 168 species: Archae - 0; Bacteria - 89; Metazoa - 0; Fungi - 0; Plants - 691; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT3G23920-MONOMERBRENDA:3.2.1.2CAZy:GH14EC:3.2.1.2eggNOG:ENOG410IE4HeggNOG:ENOG410XRH5EMBL:AF367293
EMBL:AK226274EMBL:AP001297EMBL:AY074393EMBL:AY078046EMBL:AY096517EMBL:CP002686EnsemblPlants:AT3G23920
EnsemblPlants:AT3G23920.1entrez:821975Gene3D:3.20.20.80GeneID:821975Genevisible:Q9LIR6GO:GO:0005634GO:GO:0005829
GO:GO:0005983GO:GO:0009414GO:GO:0009507GO:GO:0016161Gramene:AT3G23920.1gramene_pathway:3.2.1.2gramene_pathway:PWY-842
hmmpanther:PTHR31352hmmpanther:PTHR31352:SF13HOGENOM:HOG000238755InterPro:IPR001371InterPro:IPR001554InterPro:IPR013781InterPro:IPR017853
InterPro:IPR018238iPTMnet:Q9LIR6KEGG:00500+3.2.1.2KEGG:ath:AT3G23920KO:K01177OMA:FFKKEGGPaxDb:Q9LIR6
Pfam:PF01373Pfam:Q9LIR6PhylomeDB:Q9LIR6PRIDE:Q9LIR6PRINTS:PR00750PRINTS:PR00842PRO:PR:Q9LIR6
PROSITE:PS00506PROSITE:PS00679ProteinModelPortal:Q9LIR6Proteomes:UP000006548RefSeq:NP_189034.1scanprosite:PS00506scanprosite:PS00679
SMR:Q9LIR6STRING:3702.AT3G23920.1SUPFAM:SSF51445TAIR:AT3G23920tair10-symbols:BAM1tair10-symbols:BMY7tair10-symbols:TR-BAMY
UniGene:At.8278UniProt:Q9LIR6
Coordinates (TAIR10) chr3:+:8641722..8644199
Molecular Weight (calculated) 63765.80 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.39
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MALNLSHQLG VLAGTPIKSG EMTDSSLLSI SPPSARMMTP KAMNRNYKAH GTDPSPPMSP ILGATRADLS VACKAFAVEN GIGTIEEQRT YREGGIGGKK
101: EGGGGVPVFV MMPLDSVTMG NTVNRRKAMK ASLQALKSAG VEGIMIDVWW GLVEKESPGT YNWGGYNELL ELAKKLGLKV QAVMSFHQCG GNVGDSVTIP
201: LPQWVVEEVD KDPDLAYTDQ WGRRNHEYIS LGADTLPVLK GRTPVQCYAD FMRAFRDNFK HLLGETIVEI QVGMGPAGEL RYPSYPEQEG TWKFPGIGAF
301: QCYDKYSLSS LKAAAETYGK PEWGSTGPTD AGHYNNWPED TQFFKKEGGG WNSEYGDFFL SWYSQMLLDH GERILSSAKS IFENMGVKIS VKIAGIHWHY
401: GTRSHAPELT AGYYNTRFRD GYLPIAQMLA RHNAIFNFTC IEMRDHEQPQ DALCAPEKLV NQVALATLAA EVPLAGENAL PRYDDYAHEQ ILKASALNLD
501: QNNEGEPREM CAFTYLRMNP ELFQADNWGK FVAFVKKMGE GRDSHRCREE VEREAEHFVH VTQPLVQEAA VALTH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)