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AT3G23900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin E-set (InterPro:IPR014756), Filamin/ABP280 repeat-like (InterPro:IPR017868), RNA recognition motif, RNP-1 (InterPro:IPR000504), Immunoglobulin-like fold (InterPro:IPR013783), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.1); Has 108738 Blast hits to 50207 proteins in 2086 species: Archae - 86; Bacteria - 8977; Metazoa - 55837; Fungi - 11723; Plants - 7259; Viruses - 753; Other Eukaryotes - 24103 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JR1PeggNOG:ENOG410XVTJEMBL:CP002686EnsemblPlants:AT3G23900EnsemblPlants:AT3G23900.1EnsemblPlants:AT3G23900.3entrez:821973
ExpressionAtlas:F4J5A7Gene3D:2.60.40.10Gene3D:3.30.70.330GeneID:821973GO:GO:0000166GO:GO:0003723GO:GO:0046872
Gramene:AT3G23900.1Gramene:AT3G23900.3hmmpanther:PTHR32343hmmpanther:PTHR32343:SF8InterPro:IPR000504InterPro:IPR000571InterPro:IPR001298
InterPro:IPR012677InterPro:IPR013783InterPro:IPR014756InterPro:IPR017868OMA:HAEDAKIPfam:PF00076Pfam:PF00630
Pfscan:PS50102Pfscan:PS50103Pfscan:PS50194PROSITE:PS50102PROSITE:PS50103PROSITE:PS50194Proteomes:UP000006548
RefSeq:NP_001189958.1RefSeq:NP_189032.2SMART:SM00360SMART:SM00557SMR:F4J5A7STRING:3702.AT3G23900.1SUPFAM:SSF54928
SUPFAM:SSF81296TAIR:AT3G23900UniGene:At.37625UniGene:At.73245UniProt:F4J5A7
Coordinates (TAIR10) chr3:-:8631941..8635852
Molecular Weight (calculated) 108799.00 Da
IEP (calculated) 10.77
GRAVY (calculated) -1.16
Length 987 amino acids
Sequence (TAIR10)
(BLAST)
001: MASDRGSAAS GGKPIWMKHA EDAKIKDEGE KDAAAKAAFE ATFKGVDQTT HLIEPVAPVP ESAPESDSDS DDDDDDESDY LSRKPIGPVD PSKSTASGAG
101: IGGGTACVPS TFVVVTKDSD GRKVPNGGAL IRVKVSPGVG VGGTDQEGVV KDVGDGSYAV TYVVPKRGNY MVNIECNGNA IMGSPFPVFF SQGSSSTGLM
201: GSAPASYSNL INQTMPNMPN YTGSVSGAFP GLLGMVPGIA SGPSGGAILP GVGASLGEVC REYLNGRCVN SMCKLNHPPQ NLLMTAIAAT TSMGNLSQVP
301: MAPSAAAMAA AQAIVAAQAL QAHASQMQAQ AQSNKGSLGS PEKGENGDLK KFLQVSNLSP SLTTEQLRQL FSFCGTVVDC SITDSKHIAY IEYSNSEEAT
401: AALALNNTEV FGRALNVEIA KSLPHKPSSN NSSSSLPLMM QQAVAMQQMQ FQQAILMQQA VATQQAANRA ATMKSATELA AARAAEISRK LRPDGVGNDE
501: KEADQKSRSP SKSPARSRSK SKSPISYRRR RRSPTYSPPF RRPRSHRSRS PLRYQRRSTY EGRRRSYRDS RDISESRRYG RSDEHHSSSS RRSRSVSPKK
601: RKSGQEDSEL SRLRRDSSSR GEKKSSRAGS RSPRRRKEVK STPRDDEENK VKRRTRSRSR SVEDSADIKD KSRDEELKHH KKRSRSRSRE DRSKTRDTSR
701: NSDEAKQKHR QRSRSRSLEN DNGSHENVDV AQDNDLNSRH SKRRSKSLDE DYDMKERRGR SRSRSLETKN RSSRKNKLDE DRNTGSRRRR SRSKSVEGKR
801: SYNKETRSRD KKSKRRSGRR SRSPSSEGKQ GRDIRSSPGY SDEKKSRHKR HSRSRSIEKK NSSRDKRSKR HERLRSSSPG RDKRRGDRSL SPVSSEDHKI
901: KKRHSGSKSV KEKPHSDYEK VDDGDANSDS SQQERNLEGH LLSLDSMSSQ DVEKSKENPP SSSSVERGDA NDDEKFKIEE KRIILKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)