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AT3G23805.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ralf-like 24
Curator
Summary (TAIR10)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational
Description (TAIR10)
ralf-like 24 (RALFL24); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 31 (TAIR:AT4G13950.1); Has 244 Blast hits to 244 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3JReggNOG:ENOG41118KMEMBL:AP000377EMBL:BX825164
EMBL:CP002686EnsemblPlants:AT3G23805EnsemblPlants:AT3G23805.1entrez:821963
GeneID:821963Genevisible:Q9LK37GO:GO:0004871GO:GO:0005179
GO:GO:0005622GO:GO:0007267GO:GO:0009506GO:GO:0019722
GO:GO:0048046Gramene:AT3G23805.1hmmpanther:PTHR33136hmmpanther:PTHR33136:SF10
HOGENOM:HOG000237626InParanoid:Q9LK37InterPro:IPR008801KEGG:ath:AT3G23805
OMA:GQANAYNPaxDb:Q9LK37Pfam:PF05498Pfam:Q9LK37
PhylomeDB:Q9LK37PRIDE:Q9LK37PRO:PR:Q9LK37Proteomes:UP000006548
RefSeq:NP_566740.1TAIR:AT3G23805tair10-symbols:RALFL24UniGene:At.37645
UniProt:Q9LK37
Coordinates (TAIR10) chr3:+:8586467..8586823
Molecular Weight (calculated) 13244.10 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.25
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRSLALVYL SLLCLQTHLS ISVTVPIPSV NGEIDAMLNR NGVIGEEEGE EMMPSEISRR VMMMRKQYIS YETLRRDMVP CQKPGASYYA CRSGQANAYN
101: RGCSVITRCA RDTNDIKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)