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AT3G23770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G14080.1); Has 2823 Blast hits to 2749 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 32; Plants - 2780; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G23770-MONOMERCAZy:CBM43CAZy:GH17eggNOG:ENOG410IV95eggNOG:ENOG41113FYEMBL:AP000377EMBL:CP002686
EMBL:DQ446688EnsemblPlants:AT3G23770EnsemblPlants:AT3G23770.1entrez:821959Gene3D:3.20.20.80GeneID:821959GO:GO:0004553
GO:GO:0005975Gramene:AT3G23770.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF122InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781
InterPro:IPR017853KEGG:ath:AT3G23770OMA:QIWANLVPfam:PF00332Pfam:PF07983PhylomeDB:Q9LK41PROSITE:PS00587
Proteomes:UP000006548RefSeq:NP_189019.1scanprosite:PS00587SMART:SM00768SMR:Q9LK41STRING:3702.AT3G23770.1SUPFAM:SSF51445
TAIR:AT3G23770UniGene:At.37655UniProt:Q9LK41
Coordinates (TAIR10) chr3:+:8565556..8567196
Molecular Weight (calculated) 52173.00 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.09
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPFALFLFT LLALSSSCCS AIGPQNNRTV LALASRIGIN YGKLGNNLPF PYQSINLIKT IKAGHVKLYD ADPETLKLLS TTNLYVTIMV PNNQIISIGA
101: DQAAADNWVA TNVLPFHPQT RIRFVLVGNE VLSYSSDQDK QIWANLVPAM RKVVNSLRAR GIHNIKVGTP LAMDALRSSF PPSSGTFRED IAVPVMLPLL
201: KFLNGTNSFF FLDVYPYFPW STDPVNNHLD FALFESNSTY TDPQTGLVYT NLLDQMLDSV IFAMTKLGYP NISLAISETG WPNDGDIHET GANIVNAATY
301: NRNLIKKMTA NPPLGTPARR GAPIPTFLFS LFNENQKPGS GTERHWGILN PDGTPIYDID FSGRRSFSGF DSLPKPSNNV PFKGNVWCVA VDGADEAELG
401: QALNFACGRS NATCAALAPG GECYAPVTVT WHASYAFSSY WAQFRNQSSQ CYFNGLARET TTNPGNERCK FPSVTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)