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AT3G23710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tic22-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tic22-like family protein; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tic22-like (InterPro:IPR007378); BEST Arabidopsis thaliana protein match is: Tic22-like family protein (TAIR:AT4G33350.1); Has 104 Blast hits to 104 proteins in 42 species: Archae - 0; Bacteria - 39; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioGrid:7284eggNOG:ENOG410IHGQeggNOG:ENOG4111WM6EMBL:AP000377EMBL:CP002686EnsemblPlants:AT3G23710EnsemblPlants:AT3G23710.1
entrez:821952GeneID:821952Genevisible:F4J469GO:GO:0009536GO:GO:0015031GO:GO:0016020GO:GO:0031972
Gramene:AT3G23710.1hmmpanther:PTHR33926hmmpanther:PTHR33926:SF1HOGENOM:HOG000242260InParanoid:F4J469InterPro:IPR007378KEGG:ath:AT3G23710
OMA:DLDNSLHPaxDb:F4J469Pfam:F4J469Pfam:PF04278PRIDE:F4J469PRO:PR:F4J469ProteinModelPortal:F4J469
Proteomes:UP000006548RefSeq:NP_189013.1SMR:F4J469STRING:3702.AT3G23710.1TAIR:AT3G23710UniGene:At.43959UniProt:F4J469
Coordinates (TAIR10) chr3:+:8534061..8536148
Molecular Weight (calculated) 34577.00 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.44
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)