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AT3G23540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G14290.1); Has 4133 Blast hits to 2975 proteins in 904 species: Archae - 22; Bacteria - 1788; Metazoa - 456; Fungi - 251; Plants - 153; Viruses - 0; Other Eukaryotes - 1463 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1073eggNOG:KOG1552EMBL:BT012662EMBL:CP002686
EnsemblPlants:AT3G23540EnsemblPlants:AT3G23540.1entrez:821933ESTHER:arath-Q6NKN2
ExpressionAtlas:Q6NKN2Gene3D:3.40.50.1820GeneID:821933GO:GO:0016787
Gramene:AT3G23540.1hmmpanther:PTHR12277hmmpanther:PTHR12277:SF58HOGENOM:HOG000240066
InterPro:IPR022742InterPro:IPR029058OMA:YMPVVIPPfam:PF12146
Pfam:PF12695PhylomeDB:Q6NKN2Proteomes:UP000006548RefSeq:NP_188996.2
SUPFAM:SSF53474TAIR:AT3G23540UniGene:At.50678UniProt:Q6NKN2
Coordinates (TAIR10) chr3:+:8443665..8448070
Molecular Weight (calculated) 63024.10 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.53
Length 566 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQLVNFIIR PPRAEYDPEH DLLEKKFMMK GRWYQRKDLE VKNSRGDVLQ CSHYMPVERP EGKPLPCVIY CHGNSGCRAD GSEAAIVLLP SNITVFTLDF
101: SGSGLSGGEH VTLGWNEKDD LKAVVEFLRQ DGNISLIGLW GRSMGAVTSL MYGVEDPSIA GMILDSPFSD LVDLMMELVD TYKFRLPKFT VKFAIQFMRR
201: AIQKKAKFDI MELNTIKVAK ASFVPVLFGH ALDDDFIRPH HSDRIYEAYV GDKNIIKFPG DHNSPRPPFY FDSINIFFHN VLQPPEVVGP TFYDPLDDYF
301: ANGSWGTMND TNIPQSSVQK SLAAGSISEA INEVRKKRPM SRTDVPSNVT LTSNGSPSET KEKENPDGRG SSSSPDMISF DLSDGNQYPP HLRMALDDDQ
401: YVEYQMEDMA DFPSNAEEEE RMLMKAVMES LKDLEVQSQQ KKEPPETRIH GGSAFLNAVQ CISSREESTS TRANQSETDS ASSPVTRSQD QLPSSSESNP
501: PSETSSSLAR TVTSSVPGSL SQKESETGDV PGTKATVTVE RSSSAPGKVL DGLIRRWDLN FFKNNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)