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AT3G23390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc-binding ribosomal protein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L44e (InterPro:IPR000552), Ribosomal protein, zinc-binding domain (InterPro:IPR011332); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT4G14320.1); Has 1023 Blast hits to 1019 proteins in 360 species: Archae - 169; Bacteria - 1; Metazoa - 377; Fungi - 167; Plants - 132; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Protein Annotations
BioGrid:7252eggNOG:COG1631eggNOG:KOG3464EMBL:AB015474EMBL:AL161538EMBL:AY062855EMBL:AY065121
EMBL:AY081639EMBL:AY085174EMBL:AY085784EMBL:BT001193EMBL:CP002686EMBL:CP002687EMBL:Z97336
EnsemblPlants:AT3G23390EnsemblPlants:AT3G23390.1EnsemblPlants:AT4G14320.1entrez:821920entrez:827074ExpressionAtlas:O23290Gene3D:3.10.450.80
GeneID:821920GeneID:827074Genevisible:O23290GO:GO:0003735GO:GO:0006412GO:GO:0022625hmmpanther:PTHR10369
hmmpanther:PTHR10369:SF3HOGENOM:HOG000224989InParanoid:O23290IntAct:O23290InterPro:IPR000552InterPro:IPR011332KEGG:ath:AT3G23390
KO:K02929OMA:QIPLKRCPANTHER:PTHR10369PaxDb:O23290Pfam:O23290Pfam:PF00935PhylomeDB:O23290
PIR:A71405PRIDE:O23290PRO:PR:O23290ProDom:PD002841PROSITE:PS01172ProteinModelPortal:O23290Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_188981.1
RefSeq:NP_193168.1scanprosite:PS01172SMR:O23290STRING:3702.AT3G23390.1SUPFAM:SSF57829TAIR:AT3G23390TAIR:AT4G14320
UniGene:At.24570UniGene:At.28618UniProt:O23290
Coordinates (TAIR10) chr3:+:8375427..8376224
Molecular Weight (calculated) 12126.00 Da
IEP (calculated) 11.04
GRAVY (calculated) -1.21
Length 105 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)