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AT3G23280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : XB3 ortholog 5 in Arabidopsis thaliana
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
XB3 ortholog 5 in Arabidopsis thaliana (XBAT35); FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 4 in Arabidopsis thaliana (TAIR:AT4G14365.1); Has 26340 Blast hits to 15027 proteins in 881 species: Archae - 61; Bacteria - 2219; Metazoa - 13958; Fungi - 1495; Plants - 1186; Viruses - 392; Other Eukaryotes - 7029 (source: NCBI BLink).
Protein Annotations
BioGrid:7239EC:6.3.2.-eggNOG:ENOG410IFCZeggNOG:ENOG410XNPAEMBL:AB025608EMBL:AY045637EMBL:AY059650
EMBL:AY088137EMBL:CP002686EMBL:DQ086844EnsemblPlants:AT3G23280EnsemblPlants:AT3G23280.1entrez:821907Gene3D:1.25.40.20
Gene3D:3.30.40.10GeneID:821907Genevisible:Q4FE47GO:GO:0004842GO:GO:0005634GO:GO:0005737GO:GO:0008270
GO:GO:0016874hmmpanther:PTHR24188hmmpanther:PTHR24188:SF44HOGENOM:HOG000242293InParanoid:Q4FE47IntAct:Q4FE47InterPro:IPR001841
InterPro:IPR002110InterPro:IPR013083InterPro:IPR020683iPTMnet:Q4FE47KEGG:ath:AT3G23280OMA:CGWMRENPaxDb:Q4FE47
Pfam:PF00023Pfam:PF12796Pfam:PF13920Pfam:Q4FE47Pfscan:PS50088Pfscan:PS50089Pfscan:PS50297
PhylomeDB:Q4FE47PRIDE:Q4FE47PRO:PR:Q4FE47PROSITE:PS50088PROSITE:PS50089PROSITE:PS50297ProteinModelPortal:Q4FE47
Proteomes:UP000006548RefSeq:NP_566724.1RefSeq:NP_850628.1SMART:SM00184SMART:SM00248SMR:Q4FE47STRING:3702.AT3G23280.1
SUPFAM:SSF48403SUPFAM:SSF57850TAIR:AT3G23280tair10-symbols:XBAT35UniGene:At.26166UniPathway:UPA00143UniProt:Q4FE47
Coordinates (TAIR10) chr3:+:8321588..8324109
Molecular Weight (calculated) 50057.90 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.33
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)