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AT3G23260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G21120.1); Has 1969 Blast hits to 1915 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
DNASU:821905eggNOG:ENOG410JU42eggNOG:ENOG411078AEMBL:AB025608EMBL:BT029484EMBL:CP002686EnsemblPlants:AT3G23260
EnsemblPlants:AT3G23260.1entrez:821905GeneID:821905Genevisible:Q9LTC3Gramene:AT3G23260.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF127
HOGENOM:HOG000112505InParanoid:Q9LTC3InterPro:IPR001810InterPro:IPR006527InterPro:IPR011043InterPro:IPR017451KEGG:ath:AT3G23260
OMA:MEWRSLPPaxDb:Q9LTC3Pfam:PF00646Pfam:PF07734Pfam:Q9LTC3Pfscan:PS50181PhylomeDB:Q9LTC3
PRIDE:Q9LTC3PRO:PR:Q9LTC3PROSITE:PS50181ProteinModelPortal:Q9LTC3Proteomes:UP000006548RefSeq:NP_188967.1SMART:SM00256
SMR:Q9LTC3STRING:3702.AT3G23260.1SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT3G23260TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.53451UniGene:At.75621UniProt:Q9LTC3
Coordinates (TAIR10) chr3:+:8313334..8314422
Molecular Weight (calculated) 41910.10 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.26
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MEWRSLPVEL QEEILSRVPA KYLARLRSTS KQWNALSKTG SFAKKHSANA TKEPLIIMLK DSRVYLASVN LHGVHNNVAQ SFELGSRLYL KDPHISNVFH
101: CDGLLLLCSI KENTLEVWNP CSGEAKLIKP RHSYYKESDF YALGYDNKSS CKKYKVLRVI SQVHVQGDFK IEYEIYDFTN DSWRVHGATT ELSIRQKHPV
201: SVKGSTYWVV RNRYFPYKYF LSFDFSTERF QSLSLPQPFP YLVTDLSVVR EEQLCLFGYY NWSTTSEDLN VWVTTSLGSV VSWSKFLTIQ IIKPRVDMFD
301: YGMSFLVDEQ NKSLVCWISQ KVLHIVGEIY HIQDLDDHGR DSALRSSCSV LMNYVPSLAQ IQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)