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AT3G23210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic Helix-Loop-Helix 34 (bHLH34); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G14410.1); Has 811 Blast hits to 809 proteins in 84 species: Archae - 4; Bacteria - 15; Metazoa - 38; Fungi - 8; Plants - 717; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTIZeggNOG:ENOG41107T0EMBL:AB025608EMBL:AF488573EMBL:AY099674EMBL:AY128853EMBL:CP002686
EnsemblPlants:AT3G23210EnsemblPlants:AT3G23210.1entrez:821899Gene3D:4.10.280.10GeneID:821899Genevisible:Q9LTC7GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT3G23210.1hmmpanther:PTHR23042hmmpanther:PTHR23042:SF72
HOGENOM:HOG000238732InParanoid:Q9LTC7InterPro:IPR011598KEGG:ath:AT3G23210ncoils:CoilOMA:QETHQVCPaxDb:Q9LTC7
Pfam:PF00010Pfam:Q9LTC7Pfscan:PS50888PhylomeDB:Q9LTC7PRIDE:Q9LTC7PRO:PR:Q9LTC7PROSITE:PS50888
ProteinModelPortal:Q9LTC7Proteomes:UP000006548RefSeq:NP_188962.2SMART:SM00353SMR:Q9LTC7STRING:3702.AT3G23210.1SUPFAM:SSF47459
TAIR:AT3G23210tair10-symbols:bHLH34UniGene:At.6338UniProt:Q9LTC7
Coordinates (TAIR10) chr3:-:8283255..8284915
Molecular Weight (calculated) 35578.70 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.69
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MYPSIEDDDD LLAALCFDQS NGVEDPYGYM QTNEDNIFQD FGSCGVNLMQ PQQEQFDSFN GNLEQVCSSF RGGNNGVVYS SSIGSAQLDL AASFSGVLQQ
101: ETHQVCGFRG QNDDSAVPHL QQQQGQVFSG VVEINSSSSV GAVKEEFEEE CSGKRRRTGS CSKPGTKACR EKLRREKLND KFMDLSSVLE PGRTPKTDKS
201: AILDDAIRVV NQLRGEAHEL QETNQKLLEE IKSLKADKNE LREEKLVLKA EKEKMEQQLK SMVVPSPGFM PSQHPAAFHS HKMAVAYPYG YYPPNMPMWS
301: PLPPADRDTS RDLKNLPPVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)