AT3G23160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF668) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G04550.1); Has 431 Blast hits to 290 proteins in 19 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 424; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8260059..8261654 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 60380.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.52 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||
| Length | 531 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSEAWIVKM RNQVSSNLKH ALLLESSSTK KTPKPVSLPK QTIGILSFEV ANVMSKTIHL HRSLSDTEIS KLKAEVFHSE GVRKLVSSDE NHLLDLSVSE 101: KLDDLSRVAS VVSRLGKKCN EPALQGFEHV YEDIVNGAID FRKLGFLVKD MESMVKKMER FVNATCSLYC EMEVMNELEQ AIVKLQRSQQ HQESVKAFEQ 201: KLMWQRQDVK SLRDGSLWNQ TYDKVVEMLA RTVCTIYGRI ETVFGGLGLR GKKDVTLKRD RSKNEASKAV NSRSVAGFKD SRRSEADEFT RAGDFNFPCG 301: TNPGRMFMEC LAMNRTIGDD DDDDDEDGGR ITFPLSTARM IRSNKFGFKS RLTQHASAST IGGSALSLHY ANVVIVVEKL LKYPHLIGEE ARDDLYQMLP 401: TSLKTTLKAS LRSYLKNISI YDAPLAHDWK ETIDGILSWL APLAHNMIRW QSERNFEQQN QIVKRTNVLL LQTLYFADRE KTEAAICKLL VGLNYICHYE 501: QQQNALLDCA SSFDYEDCFE WQSQCRAAYL D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)