AT3G23090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytoskeleton What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TPX2 (targeting protein for Xklp2) protein family | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WVD2-like 1 (TAIR:AT3G04630.3); Has 678 Blast hits to 638 proteins in 104 species: Archae - 2; Bacteria - 22; Metazoa - 209; Fungi - 27; Plants - 299; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8214533..8216983 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 37784.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.57 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.15 | ||||||||||||||||||||||||
| Length | 338 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDICMDKEPD GVVVYANGDS CNPNQENVSE PLLDSVSRDD ANVHTELRYG EENIEVNEYD VKECTSEIPV GKPIGDDFES KDVTKSSLHA KHASKSGRGN 101: NKTRNTVPQP FSLATEKRAS STRSFTSESL ESAGLKKFPD GHSKVQSQAT KVPRKPLQPK NKKLSDEEDS CSVASYATSG AKSAKSRTVV TAAPSFRSTE 201: RAEKRKEFYT KLEEKHQAME AEKTQSEARN KEATEAALRQ LRKSLRFKAN PMPKFYHEGP PPKVELKKPL PTRAKSPKLG RRNPKEGNRA KGASRRHETR 301: KTLVISKEDH DDETTRNADQ INHKEMNRNL EPETAFAC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)