AT3G23080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.790 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G14500.1); Has 367 Blast hits to 366 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8207612..8209181 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47611.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.38 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||
| Length | 419 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDIFMDFFNK PSVTETFVDV LLCAVPIWVT VMIGLLIGWS WRPRWTSLVY LGFRSKLRFL CTVPPGFGAR RIWLAFTALS AFSVCSTSNK SSVNNGSSKP 101: VEEEAFSRAS DKVTEKEKDV VTEKDLEHLL HLLEAGNASF EWQSMMDKST PNMSYQAWRH EPEIGPVVYR SRTVFEDVTP DIVRDFFWDD EFRPKWDTML 201: AYFKTLEEDP KTGTTIVHWI KKFPFFCSDR EYIIGRRIWE SGRKYYAVTK GVPYKALSKR DKPRRVELYF SSWIINAVES RKGDGQMTAC EVSLVHYEDM 301: GIPKDVAKLG VRHGMWGAVK KLNSGLRAYQ SARKPGTSLS RSAQMASITT KLNMDLVETS GAEDEERGRA VENARKQNDQ FGVDWKWIVV GGVALACGLH 401: SSAIGKALMV GAGQRLARR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)