AT3G22990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LEAF AND FLOWER RELATED (LFR); FUNCTIONS IN: binding; INVOLVED IN: flower development, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 69 Blast hits to 69 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8164015..8166145 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50115.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQKRELGKSG GNSGGSSGPP AKRGRPFGST SANSAAAAAA AAAADAMSPS ALLGPSLLVH NSFVEQNNRR IVLALQSGLK SEVTWALNTL TLLSFKEKED 101: IRRDVMPLAK IAGLLDALLL IIDDWRDIAL PKDLTRGTRV RTLGTNASVT GFGNEYDALA SIQPPGSGIG SSAAEALGKK STGKHQSSQW WMEEDGLFNL 201: DDEGRSEKQM CAIAASNVIR NFSFMPDNEV VMAQHRHCLE TVFQCIHDHM TEDEELVTNS LETIVNLAHL MDLRIFSSLK QSYININEKK AVQAVVGILN 301: SSVKAWNCAA AELLGRLIIN PDNEPFISPL IPQIHKRLID LLSIQAVDAQ AAAVGALYNL VEVNMDCRLK LASERWAVDR LLKVIKTPHP VPEVCRKAAM 401: ILENLVSEPQ NRGLLLAYEN AFAELLFQEG KYSDSFARIL YELTARSNSR VASARGIWGM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)