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AT3G22980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.970
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S5/Elongation factor G/III/V family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1); Has 75542 Blast hits to 60298 proteins in 6538 species: Archae - 1481; Bacteria - 47710; Metazoa - 4520; Fungi - 3401; Plants - 1472; Viruses - 1; Other Eukaryotes - 16957 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0480eggNOG:KOG0467EMBL:CP002686EnsemblPlants:AT3G22980EnsemblPlants:AT3G22980.1entrez:821872Gene3D:3.30.230.10
Gene3D:3.30.70.240Gene3D:3.40.50.300GeneID:821872GO:GO:0003746GO:GO:0003924GO:GO:0005525GO:GO:0005829
GO:GO:0005840Gramene:AT3G22980.1hmmpanther:PTHR23115hmmpanther:PTHR23115:SF13InParanoid:F4J2T9InterPro:IPR000640InterPro:IPR000795
InterPro:IPR004161InterPro:IPR009000InterPro:IPR009022InterPro:IPR014721InterPro:IPR020568InterPro:IPR027417iPTMnet:F4J2T9
KEGG:ath:AT3G22980KO:K14536OMA:FAHLYAVPaxDb:F4J2T9Pfam:PF00009Pfam:PF00679Pfam:PF03144
Pfam:PF14492Pfscan:PS51722PRIDE:F4J2T9PRINTS:PR00315PROSITE:PS51722ProteinModelPortal:F4J2T9Proteomes:UP000006548
RefSeq:NP_188938.1SMART:SM00838SMR:F4J2T9STRING:3702.AT3G22980.1SUPFAM:SSF50447SUPFAM:SSF52540SUPFAM:SSF54211
SUPFAM:SSF54980TAIR:AT3G22980UniGene:At.37782UniGene:At.74190UniProt:F4J2T9
Coordinates (TAIR10) chr3:-:8160269..8163316
Molecular Weight (calculated) 111960.00 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.18
Length 1015 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDESEGRKVR NICILAHVDH GKTTLADHLI ASSGGGVLHP RLAGKLRFMD YLDEEQRRAI TMKSSSISLK YKDYSLNLID SPGHMDFCSE VSTAARLSDG
0101: ALVLVDAVEG VHIQTHAVLR QAWIEKLTPC LVLNKIDRLI FELRLSPMEA YTRLIRIVHE VNGIVSAYKS EKYLSDVDSI LASPSGELSA ESLELLEDDE
0201: EVTFQPQKGN VVFVCALDGW GFGIAEFANF YASKLGASAT ALQKSLWGPR YYIPKTKMIV GKKNLSAGSK AKPMFVQFVL EPLWQVYEAA LDPGGDKAVL
0301: EKVIKSFNLS IPPRELQNKD PKNVLQSVMS RWLPLSDAVL SMAVKHLPDP IAAQAYRIPR LVPERKIIGG DDVDSSVLAE AELVRKSIEA CDSSSDSPCV
0401: VFVSKMFAIP MKMIPQDGNH RERMNGLNDD DSKSESDECF LAFARIFSGV LRAGQRVFVI TALYDPLKGE SSHKYIQEAE LHSLYLMMGQ GLTPVTEVKA
0501: GNVVAIRGLG PYISKSATLS STRNCWPLAS MEFQVSPTLR VAIEPSDPAD MSALMKGLRL LNRADPFVEI TVSARGEHVL AAAGEVHLER CVKDLKERFA
0601: KVNLEVSPPL VSYRETIEGD GSNLLESLRS LSLNSSDYIE KRTPNGRCII RVHVMKLPHA LTKLLDENTE LLGDIIGGKG SHSVKILESQ KPSLGENVDP
0701: IEELKKQLVE AGVSSSSETE KDREKCKTEW SKLLKRIWAL GPREKGPNIL FAPDGKRIAE DGSMLVRGSP HVSQRLGFTE DSTETPAEVS ETALYSEALT
0801: LESSIVSGFQ LATASGPLCD EPMWGLAFTI ESHLAPAEDV ETDKPENFGI FTGQVMTAVK DACRAAVLQT NPRIVEAMYF CELNTAPEYL GPMYAVLSRR
0901: RARILKEEMQ EGSSLFTVHA YVPVSESFGF ADELRKGTSG GASALMVLSH WEMLEEDPFF VPKTEEEIEE FGDGASVLPN TARKLINAVR RRKGLHVEEK
1001: VVQYATKQRT LARKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)