AT3G22950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ADP-ribosylation factor C1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ADP-ribosylation factor C1 (ARFC1); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 17774 Blast hits to 17763 proteins in 550 species: Archae - 23; Bacteria - 45; Metazoa - 8202; Fungi - 2537; Plants - 2915; Viruses - 3; Other Eukaryotes - 4049 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8136364..8137513 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20549.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.89 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 183 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI 101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)