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AT3G22870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G22421.1); Has 1136 Blast hits to 1073 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1132; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:AP001300EMBL:CP002686EnsemblPlants:AT3G22870EnsemblPlants:AT3G22870.1
entrez:821859GeneID:821859Genevisible:Q9LIL1Gramene:AT3G22870.1
hmmpanther:PTHR32133hmmpanther:PTHR32133:SF120HOGENOM:HOG000112505InParanoid:Q9LIL1
InterPro:IPR001810InterPro:IPR006527InterPro:IPR011043InterPro:IPR017451
KEGG:ath:AT3G22870OMA:LTCKEWEPaxDb:Q9LIL1Pfam:PF00646
Pfam:PF07734Pfam:Q9LIL1Pfscan:PS50181PhylomeDB:Q9LIL1
PRIDE:Q9LIL1PRO:PR:Q9LIL1PROSITE:PS50181ProteinModelPortal:Q9LIL1
Proteomes:UP000006548RefSeq:NP_188927.1SMART:SM00256SMR:Q9LIL1
SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT3G22870
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.65127UniProt:Q9LIL1
Coordinates (TAIR10) chr3:+:8096230..8097471
Molecular Weight (calculated) 48528.00 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.22
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLTISDLPR DLKKKIFSRI PLRYVRALRL TCKEWETLIK SRSLKIDEEE SQMVALMDYN LCLMSKSFNG GDPSTEIKGK LTCFDEQVKV SMLFHCEGLL
101: LCILKDDNTK VVVWNPYLGQ RRFIQVRFSH IPGGWDQFSY ALGYYKNNNM MKSFKLLRFF DYFYTSNDFV FYEIYDFDSG LWKTLDVTPY WRIRFFDDIG
201: VSLKGNTYWC AKERKPEWNA DPFIIVDHII CFDFTSERFG PLVPLPFRAM KESLVTLSCV REEKLAALFC RDVVVEVWIT TTIEFDKVSW SKFLTFGVRD
301: CPMIYSCTGS FFIDEVNKVA VIFGQPLKRD KVFIIGEAGQ VRDVDLGEPA HQDSWLYVCP YVPSLVKIKQ PPGCKRRRQS SSENRRYKRN MMRLVELEKY
401: HIAMEPKRGD KTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)