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AT3G22700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.757
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G22720.1); Has 1733 Blast hits to 1679 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1731; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:AB022223EMBL:CP002686EMBL:DQ056604EnsemblPlants:AT3G22700EnsemblPlants:AT3G22700.1entrez:821841GeneID:821841
Genevisible:Q9LUJ1Gramene:AT3G22700.1HOGENOM:HOG000112505InParanoid:Q9LUJ1InterPro:IPR001810InterPro:IPR006527InterPro:IPR017451
iPTMnet:Q9LUJ1KEGG:ath:AT3G22700PaxDb:Q9LUJ1Pfam:PF00646Pfam:PF07734Pfam:Q9LUJ1Pfscan:PS50181
PhylomeDB:Q9LUJ1PRIDE:Q9LUJ1PRO:PR:Q9LUJ1PROSITE:PS50181ProteinModelPortal:Q9LUJ1Proteomes:UP000006548RefSeq:NP_188909.1
SMART:SM00256SMR:Q9LUJ1STRING:3702.AT3G22700.1SUPFAM:SSF81383TAIR:AT3G22700TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.62405UniProt:Q9LUJ1
Coordinates (TAIR10) chr3:-:8024798..8025814
Molecular Weight (calculated) 40082.30 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.33
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNLPLDLVE EILSRVPATS LKRLRSTCRQ WNALLKDRRF TEKHFRKAPK ESLVLMLKEI SVNLNVTPPS IEFKDALGLK DSHSNSEQVD IVQVLHCDGL
101: LLCTTKDNRH VVWNPCLGET HWIQFKVDYG RVYSSFALGY IQNNESCRSY KILWRWKSND YKSSPRQRGF EIYEFISDKW RVIDDVNHDS LVNHNYLGRC
201: CRVSLKGNIY WLVDDVEDNS RSLLMFDFKT ERFKRLCLPH FENVGHMVLS FVREEQLSVL YWSRATPKME IWITNNIDTD ATLLWRLHLD TRFNCVRIFS
301: SLYFEEEKKV VLCCNVKLLM MIRSARTWYT LSERTMDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)