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AT3G22620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.959
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: chloroplast envelope; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G05450.2); Has 884 Blast hits to 840 proteins in 101 species: Archae - 0; Bacteria - 84; Metazoa - 49; Fungi - 31; Plants - 622; Viruses - 18; Other Eukaryotes - 80 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZY2eggNOG:ENOG410YQE6EMBL:AP000731EMBL:AY035005
EMBL:AY113897EMBL:CP002686EnsemblPlants:AT3G22620EnsemblPlants:AT3G22620.1
entrez:821833GeneID:821833GO:GO:0009941Gramene:AT3G22620.1
hmmpanther:PTHR33044hmmpanther:PTHR33044:SF13HOGENOM:HOG000240488InterPro:IPR016140
KEGG:ath:AT3G22620OMA:CFNFITSPfam:PF14368PhylomeDB:Q9LJ85
Proteomes:UP000006548RefSeq:NP_566713.1SMART:SM00499SMR:Q9LJ85
STRING:3702.AT3G22620.1SUPFAM:SSF47699TAIR:AT3G22620UniGene:At.398
UniGene:At.48695UniProt:Q9LJ85
Coordinates (TAIR10) chr3:+:8008615..8009415
Molecular Weight (calculated) 20780.00 Da
IEP (calculated) 6.25
GRAVY (calculated) 0.15
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKIISLVVA MIAVLALPIR GQQQPLSQCT PSMMTTVSPC MGFITNSSSN GTSPSSDCCN SLRSLTTGGM GCLCLIVTGT VPFNIPINRT TAVSLPRACN
101: MPRVPLQCQA NIAPAAAPGP AATFGPSMSP GPETDPIVPE PTPAAQTPQS DTTRPFTPSV DGGAPTSDDG GSTSRPSETP SSAYALSPSL LFFSIALVAL
201: KFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)