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AT3G22530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.525
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZUXeggNOG:ENOG41128RQEMBL:AY072391EMBL:BT000171EMBL:CP002686EnsemblPlants:AT3G22530EnsemblPlants:AT3G22530.1
entrez:821824GeneID:821824GO:GO:0005774Gramene:AT3G22530.1hmmpanther:PTHR33879hmmpanther:PTHR33879:SF3IntAct:Q8VY73
KEGG:ath:AT3G22530OMA:PIPRNINPhylomeDB:Q8VY73Proteomes:UP000006548RefSeq:NP_566710.1STRING:3702.AT3G22530.1TAIR:AT3G22530
UniGene:At.66480UniProt:Q8VY73
Coordinates (TAIR10) chr3:-:7977774..7978370
Molecular Weight (calculated) 22118.70 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.18
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)