AT3G22500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.865 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Seed maturation protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
late embryogenesis abundant (LEA) protein | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 (ATECP31); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: Seed maturation protein (TAIR:AT3G22490.1); Has 174 Blast hits to 167 proteins in 32 species: Archae - 0; Bacteria - 36; Metazoa - 4; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7971920..7972865 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26780.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 256 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQEQPRRPR EPVKYGDVFE VSGELADKPI APEDAKMMQS AETHVFGHTQ KGGPAAVMQS AATTNIRGGF VHPDDKTELV AERGATVEQT VPAATVTTEF 101: VGGQVVGQHV EPRRVVAAAR TDEEALQSTI TIGEALEATV KTAGNKPVDQ SDAAAIQAAE MRASGTNVIA LAGVAASAQS AADHNATVDR DERKIKLRDV 201: LTGAAGKLSA DRAVTREDAE GVVSAEMRNN PKLCTHPGGV AASLTVAARL NERVDI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)