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AT3G22440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FRIGIDA-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1385 Blast hits to 1327 proteins in 123 species: Archae - 0; Bacteria - 9; Metazoa - 139; Fungi - 70; Plants - 1142; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:7147eggNOG:ENOG410IGJGeggNOG:ENOG410YC7XEMBL:AB022215EMBL:AY050770EMBL:AY085142EMBL:AY096625
EMBL:CP002686EnsemblPlants:AT3G22440EnsemblPlants:AT3G22440.1entrez:821815GeneID:821815Genevisible:Q9LUV4GO:GO:0009908
GO:GO:0030154Gramene:AT3G22440.1hmmpanther:PTHR31791hmmpanther:PTHR31791:SF2HOGENOM:HOG000083443InParanoid:Q9LUV4IntAct:Q9LUV4
InterPro:IPR012474iPTMnet:Q9LUV4KEGG:ath:AT3G22440ncoils:CoilOMA:VRSPSHAPaxDb:Q9LUV4Pfam:PF07899
Pfam:Q9LUV4PhylomeDB:Q9LUV4PRIDE:Q9LUV4PRO:PR:Q9LUV4ProteinModelPortal:Q9LUV4Proteomes:UP000006548RefSeq:NP_566709.1
STRING:3702.AT3G22440.1TAIR:AT3G22440UniGene:At.24509UniGene:At.32364UniGene:At.64533UniGene:At.67034UniProt:Q9LUV4
Coordinates (TAIR10) chr3:+:7959854..7961886
Molecular Weight (calculated) 59232.60 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.48
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)