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AT3G22380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : time for coffee
Curator
Summary (TAIR10)
Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses. Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night. TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action.
Computational
Description (TAIR10)
TIME FOR COFFEE (TIC); BEST Arabidopsis thaliana protein match is: TIC-like (TAIR:AT3G63180.1); Has 35078 Blast hits to 21616 proteins in 942 species: Archae - 10; Bacteria - 2414; Metazoa - 18018; Fungi - 6283; Plants - 1621; Viruses - 189; Other Eukaryotes - 6543 (source: NCBI BLink).
Protein Annotations
BioGrid:7139eggNOG:ENOG410IJ0TeggNOG:ENOG410Y4BVEMBL:AB022215EMBL:AF367257EMBL:AY035062EMBL:CP002686
EnsemblPlants:AT3G22380EnsemblPlants:AT3G22380.1entrez:821807ExpressionAtlas:Q94KE2GeneID:821807Genevisible:Q94KE2GO:GO:0005634
GO:GO:0048511HOGENOM:HOG000015193InParanoid:Q94KE2iPTMnet:Q94KE2PaxDb:Q94KE2Pfam:Q94KE2PhylomeDB:Q94KE2
PRIDE:Q94KE2PRO:PR:Q94KE2Proteomes:UP000006548RefSeq:NP_566705.1STRING:3702.AT3G22380.2TAIR:AT3G22380tair10-symbols:TIC
UniGene:At.21572UniGene:At.67095UniProt:Q94KE2
Coordinates (TAIR10) chr3:+:7913181..7918879
Molecular Weight (calculated) 164465.00 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.82
Length 1550 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDRNREARRV PMAAAGNGLS RRRHRAGSFR DSPEEEGPVE LPEAARLRDR GGSNKKDRDR ERDRDRERER ERDRERDRLN SRSKRRRGER LMMVHGNLDD
0101: GGDDSSEESV NDDEEYDDGG VGPPSSLKML PPTSNNISAA SFSSSLSNHH NGGSGNLHHH HHSHNNNHQR KNNFPPTKVF RSSPSPAPVS PLVSTWKAAD
0201: EMIGVSVPRK ARSACTKRPH ESWASSTTGG GVFASGEQIH RQISSTSPAN RVSPASILAS PSPPAPTSPS SSSISVRKKL PSGTKQKPLP PKSSSSKLSS
0301: PVAVQDEIEI EIAEVLYGMM RMPSTSKQEA AGNDLTEAAK STVEVKSRVS SPISNPQTLP QSSITLAANS SSSNVSAIAP KRKKPRHVKY EDDNSSRVTT
0401: IKSEAEAPSK SQVPFSNQLK SSGSGEGNSS VLDSIIPLTR ESNASLDSEK KENNLSKDET ILPKVESSSG FRSDGEGAKS SSPEKEKFEI DLMAPPPVRS
0501: SSERGGEMME CVAAEAKPKV TEVETEAKPL LKEDRSDPAI HDSQEKKRPR MVAEAEHHKF ERNCELKLDL DKSDHVGLVN KHHVQKPPPQ QQLSVPDKTA
0601: QASHLPLHMS MPGWPGGLPT MGYMAPTQGV VPTDTSSLSA AAMQPPPHLL FNQPRPKRCA THCYIARNIQ SHQQFTKMNP FWPAAAGSAP MYGTKACNLS
0701: LMPPTELQGS VLGRSSNPVQ DKNSQSTSKS SETAQRNQLM LQQALPPGAA NSILHGPTFI FPLGQQPHAA ATIAAASVRP PNSGITSSGP TATSTSMNGS
0801: ASATPAGAPT MSFSYPAMPG NETQYLAILQ NNGYPFPVPA HVGAQPAYRG APGQPMPFFN GSFYSSQMIQ PPHHQPQKQH QQQLTGQMLQ SHAPNNQNGS
0901: ASTGSSAAQK HLQNQQLRPP INHGNSQGFP THKVQSQPLN FQQRQQPREN ATQHSETVGE DSPSTADSRG SRSNVAYGQN YGMQMQPTNL GLMSSPAPGG
1001: GVVGSSSSHG EKKSQQQVSK AGVESFQSPG YAMTFATFNG ANTAPTLNMS SIAQNHAMFH SMPEAARQGY QMMAAQAAQQ KMNYGASLED GKSGSIGGAA
1101: TANNTPEEQR KSGGGAIGKT SGGNGGQSIA FSNKQDLADA SVSAVTSGSI VDSSSRLLNL GSALPQSSGS LPTSHHQQLL QQQQQQHMQR SQSQQPYTTM
1201: YLQKQQRYAT SVAASAARTK GPVVSNGSGF PDHNMTTSPA GTTKFANANS GFPQNLVQSS SNQVQSQQWK NNSPRTTNTT QAQSPSMLSP STSVAAASSL
1301: RNIPHKQQSR PQQSQISFAA NSKPMTSGSP MQQVQGGTNH QAPSPPMLVG SPSTSSVSKN ASGSPRTTAS ASSAANKGGQ ASTTTHSASQ PSKNLQPASA
1401: ASSAGGRNNG PSVLGNPTTS SGSKSQQQQQ LPKHGLQPQA QLFFSNPYMQ AQHQHQQQQI TISPSGGYYI QRHQQQSGSA PAVPVTGAVT ATSDPAKAIA
1501: AASAANNMKG GGGMGKTQQH QLGPPGFTNV HAVSSAVQVK PVDQKQQAGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)