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AT3G22350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.955
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G22730.1); Has 1679 Blast hits to 1630 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1677; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JURCeggNOG:ENOG41106MKEMBL:CP002686EnsemblPlants:AT3G22350EnsemblPlants:AT3G22350.1entrez:821804Gene3D:2.130.10.80
GeneID:821804Gramene:AT3G22350.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF82InterPro:IPR001810InterPro:IPR006527InterPro:IPR011043
InterPro:IPR015916InterPro:IPR017451OMA:YYSEIPYPaxDb:F4J085Pfam:PF00646Pfam:PF07734Pfscan:PS50181
PRIDE:F4J085PROSITE:PS50181ProteinModelPortal:F4J085Proteomes:UP000006548RefSeq:NP_188874.1SMART:SM00256SMR:F4J085
SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT3G22350TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.65119
UniProt:F4J085
Coordinates (TAIR10) chr3:+:7901905..7903041
Molecular Weight (calculated) 44247.80 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.31
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDLPLDLVE EILSRVSATS LKRLRSTCKQ WNTLFKKRSF SQKHFHIAPK ESMVLMLKEY RVCSMNINLN VSPPSVEFQG TLGIKDDSHS NLGQVEIVEV
101: YHCDGLLLCA TRDNRLVVWN PCLGETRWIQ LKDECRRYST FALGYENNKF CRRNYKILRY WGWFHDHIPD DGGRFRFEIY DFRSDSWKVL DDVPDDRFPP
201: VSVVSLKGNT YWFGSNKKDF LRSFDFTTER FNHIGLPPSR DHGFMALSVV GEEQLSVLQE IETSKMEIFV TNKVGTEEAA LLWSKSFIVD LPIGGHCSEV
301: FASLLINEEK KVALCCNLDF ETDGNLIFTI GEDNKYYSEI PYATNKPWWL CRFSEKFTKK WWWFPFIYNY VPSLVQIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)