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AT3G22320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Eukaryotic rpb5 RNA polymerase subunit family protein
Curator
Summary (TAIR10)
Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.
Computational
Description (TAIR10)
NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381), RNA polymerase, subunit H/Rpb5, conserved site (InterPro:IPR020608); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C (TAIR:AT5G57980.1); Has 1046 Blast hits to 1046 proteins in 368 species: Archae - 260; Bacteria - 0; Metazoa - 162; Fungi - 216; Plants - 118; Viruses - 20; Other Eukaryotes - 270 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G22320-MONOMERBioGrid:7133DIP:DIP-48677NeggNOG:COG2012eggNOG:KOG3218EMBL:AB022215EMBL:AF019248
EMBL:AF370551EMBL:AF412101EMBL:AY086150EMBL:BT002130EMBL:CP002686EnsemblPlants:AT3G22320EnsemblPlants:AT3G22320.1
entrez:821801Gene3D:3.40.1340.10Gene3D:3.90.940.20GeneID:821801Genevisible:O81098GO:GO:0000418GO:GO:0003677
GO:GO:0003899GO:GO:0005665GO:GO:0005666GO:GO:0005736GO:GO:0006360GO:GO:0006366GO:GO:0006383
Gramene:AT3G22320.1HAMAP:MF_00025hmmpanther:PTHR10535HOGENOM:HOG000205213InParanoid:O81098IntAct:O81098InterPro:IPR000783
InterPro:IPR005571InterPro:IPR014381InterPro:IPR020608InterPro:IPR020609KEGG:ath:AT3G22320KO:K03013OMA:NQLMRIQ
PaxDb:O81098Pfam:O81098Pfam:PF01191Pfam:PF03871PhylomeDB:O81098PIR:T51950PIRSF:PIRSF000747
PRIDE:O81098PRO:PR:O81098ProDom:PD005155PROSITE:PS01110ProteinModelPortal:O81098Proteomes:UP000006548Reactome:R-ATH-112382
Reactome:R-ATH-113418Reactome:R-ATH-1834949Reactome:R-ATH-674695Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086
Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72203Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042
Reactome:R-ATH-77075RefSeq:NP_188871.1scanprosite:PS01110SMR:O81098STRING:3702.AT3G22320.1SUPFAM:0036684SUPFAM:SSF53036
SUPFAM:SSF55287TAIR:AT3G22320tair10-symbols:ATRPABC24.3tair10-symbols:NRPB5tair10-symbols:NRPD5tair10-symbols:RPB5AUniGene:At.28063
UniGene:At.6260UniProt:O81098
Coordinates (TAIR10) chr3:-:7891045..7892094
Molecular Weight (calculated) 24302.80 Da
IEP (calculated) 10.05
GRAVY (calculated) -0.47
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)