AT3G22290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Endoplasmic reticulum vesicle transporter protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Endoplasmic reticulum vesicle transporter protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G22200.1); Has 1158 Blast hits to 1071 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 263; Plants - 270; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7882082..7885260 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40095.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||
| Length | 354 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGVKQALRSI DAFPRAEDHL LQKTQSGAVV SIVGLLIMAT LFLHELSYYL NTLTVHQMSV DLKRGETLPI HVNMTFPSLP CDVLSVDAID MSGKHEVDLD 101: TNIWKLRLNS HGHIIGTEYI SDLVEKGHEH GHSPHKHDGK EEHKNETETE ALNILGFDQA AETMIKKVKQ ALADGEGCRV YGVLDVQRVA GNFHISVHGL 201: NIYVAQMIFG GSKNVNVSHM IHDLSFGPKY PGIHNPLDDT NRILHDTSGT FKYYIKIVPT EYRYLSKDVL STNQYSVTEY FTPMTEFDRT WPAVYFLYDL 301: SPITVTIKEE RRSFLHLITR LCAVLGGTFA LTGMLDRWMF RFIESFNKKP STRA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)