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AT3G22230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L27e protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT4G15000.1); Has 765 Blast hits to 765 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
BioGrid:7119eggNOG:COG2163eggNOG:KOG3418EMBL:AP001306EMBL:AY062617EMBL:AY063860EMBL:AY086536
EMBL:AY091218EMBL:AY093389EMBL:AY136321EMBL:BT000418EMBL:CP002686EnsemblPlants:AT3G22230EnsemblPlants:AT3G22230.1
entrez:821787Gene3D:2.30.30.30GeneID:821787Genevisible:Q8LCL3GO:GO:0003735GO:GO:0005829GO:GO:0006412
GO:GO:0022625GO:GO:0022626Gramene:AT3G22230.1hmmpanther:PTHR10497HOGENOM:HOG000210138InParanoid:Q8LCL3InterPro:IPR001141
InterPro:IPR008991InterPro:IPR014722InterPro:IPR018262iPTMnet:Q8LCL3KEGG:ath:AT3G22230KO:K02901ncoils:Coil
OMA:KIYKPGKPANTHER:PTHR10497PaxDb:Q8LCL3Pfam:PF01777Pfam:Q8LCL3PhylomeDB:Q8LCL3PRIDE:Q8LCL3
PRO:PR:Q8LCL3ProDom:PD009396PROSITE:PS01107ProteinModelPortal:Q8LCL3Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_188862.1scanprosite:PS01107SMR:Q8LCL3
STRING:3702.AT3G22230.1SUPFAM:SSF50104TAIR:AT3G22230UniGene:At.5917UniGene:At.71423UniGene:At.72236UniProt:Q8LCL3
Coordinates (TAIR10) chr3:-:7844136..7844543
Molecular Weight (calculated) 15615.50 Da
IEP (calculated) 10.98
GRAVY (calculated) -0.54
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKFLKQNKA VILLQGRYAG KKAVIIKSFD DGTSDRRYGH CLVAGLKKYP SKVIRKDSAK KTAKKSRVKC FIKLVNYQHL MPTRYTLDVD LKEVATLDAL
101: KSKDKKVTAL KEAKAKLEER FKTGKNRWFF TKLRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)