AT3G22220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hAT transposon superfamily | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 845 Blast hits to 775 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 835; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7839808..7842358 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86395.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.36 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||
| Length | 761 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSDLEPVAL TPQKQDSAWK HCEVYKYGDR VQMRCLYCRK MFKGGGITRV KEHLAGKKGQ GTICDQVPDE VRLFLQQCID GTVRRQRKRR KSSPEPLPIA 101: YFPPCEVETQ VAASSDVNNG FKSPSSDVVV GQSTGRTKQR TYRSRKNNAF ERNDLANVEV DRDMDNLIPV AISSVKNIVH PTSKEREKTV HMAMGRFLFD 201: IGADFDAANS VNVQPFIDAI VSGGFGVSIP THEDLRGWIL KSCVEEVKKE IDECKTLWKR TGCSVLVQEL NSNEGPLILK FLVYCPEKVV FLKSVDASEI 301: LDSEDKLYEL LKEVVEEIGD TNVVQVITKC EDHYAAAGKK LMDVYPSLYW VPCAAHCIDK MLEEFGKMDW IREIIEQART VTRIIYNHSG VLNLMRKFTF 401: GNDIVQPVCT SSATNFTTMG RIADLKPYLQ AMVTSSEWND CSYSKEAGGL AMTETINDED FWKALTLANH ITAPILRVLR IVCSERKPAM GYVYAAMYRA 501: KEAIKTNLAH REEYIVYWKI IDRWWLQQPL YAAGFYLNPK FFYSIDEEMR SEIHLAVVDC IEKLVPDVNI QDIVIKDINS YKNAVGIFGR NLAIRARDTM 601: LPAEWWSTYG ESCLNLSRFA IRILSQTCSS SIGSVRNLTS ISQIYESKNS IERQRLNDLV FVQYNMRLRR IGSESSGDDT VDPLSHSNME VLEDWVSRNQ 701: VCIEGNGSSD WKSLEFIKRS EEVAVVIDET EDLGSGFDDA EIFKGEKEAS YEGGYSENLF T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)