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AT3G22160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem, inflorescence meristem, sepal, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT4G15120.1); Has 263 Blast hits to 244 proteins in 52 species: Archae - 0; Bacteria - 16; Metazoa - 25; Fungi - 26; Plants - 140; Viruses - 8; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5KDeggNOG:ENOG410ZCTVEMBL:AP001306EMBL:AY088580EMBL:CP002686EnsemblPlants:AT3G22160EnsemblPlants:AT3G22160.1
entrez:821780GeneID:821780Genevisible:Q9LIE6GO:GO:0005634Gramene:AT3G22160.1hmmpanther:PTHR33179hmmpanther:PTHR33179:SF7
HOGENOM:HOG000114092InterPro:IPR008889KEGG:ath:AT3G22160OMA:NNNQTFFPaxDb:Q9LIE6Pfam:PF05678Pfam:Q9LIE6
PhylomeDB:Q9LIE6PRIDE:Q9LIE6PRO:PR:Q9LIE6ProteinModelPortal:Q9LIE6Proteomes:UP000006548RefSeq:NP_566699.1STRING:3702.AT3G22160.1
TAIR:AT3G22160UniGene:At.42989UniProt:Q9LIE6
Coordinates (TAIR10) chr3:-:7818148..7818726
Molecular Weight (calculated) 20391.10 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.74
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPNEWSQF YNNNQTFFTT STTASTAVTT TTAGDTTSID SRLSPETGRV TKPTRRRSRA SRRTPTTLLN TDTSNFRAMV QQYTGGPSAM AFGSGNTTSA
101: FSLTSSSDPS AGSSQQAPWQ YNFQPHAPLQ PPQRPYMFSL NNVNPVVGYS NMNNPNTMVS GVFGTVDGSG GGGSAPSSKE ATNSNSSSSR LQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)