AT3G22150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 cytosol 0.000 ASURE: mitochondrion,plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48288 Blast hits to 14244 proteins in 270 species: Archae - 2; Bacteria - 15; Metazoa - 107; Fungi - 102; Plants - 47393; Viruses - 0; Other Eukaryotes - 669 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7813028..7815490 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91854.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 820 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGSALPLPP PPPLSLQSPS QNQTRHSSTF SPPTLTPQTP SIRSRLSKIC QDGNPQLARQ LFDAIPKPTT VLWNTIIIGF ICNNLPHEAL LFYSRMKKTA 101: PFTNCDAYTY SSTLKACAET KNLKAGKAVH CHLIRCLQNS SRVVHNSLMN MYVSCLNAPD CFEYDVVRKV FDNMRRKNVV AWNTLISWYV KTGRNAEACR 201: QFGIMMRMEV KPSPVSFVNV FPAVSISRSI KKANVFYGLM LKLGDEYVKD LFVVSSAISM YAELGDIESS RRVFDSCVER NIEVWNTMIG VYVQNDCLVE 301: SIELFLEAIG SKEIVSDEVT YLLAASAVSA LQQVELGRQF HGFVSKNFRE LPIVIVNSLM VMYSRCGSVH KSFGVFLSMR ERDVVSWNTM ISAFVQNGLD 401: DEGLMLVYEM QKQGFKIDYI TVTALLSAAS NLRNKEIGKQ THAFLIRQGI QFEGMNSYLI DMYSKSGLIR ISQKLFEGSG YAERDQATWN SMISGYTQNG 501: HTEKTFLVFR KMLEQNIRPN AVTVASILPA CSQIGSVDLG KQLHGFSIRQ YLDQNVFVAS ALVDMYSKAG AIKYAEDMFS QTKERNSVTY TTMILGYGQH 601: GMGERAISLF LSMQESGIKP DAITFVAVLS ACSYSGLIDE GLKIFEEMRE VYNIQPSSEH YCCITDMLGR VGRVNEAYEF VKGLGEEGNI AELWGSLLGS 701: CKLHGELELA ETVSERLAKF DKGKNFSGYE VLLSNMYAEE QKWKSVDKVR RGMREKGLKK EVGRSGIEIA GYVNCFVSRD QEHPHSSEIY DVIDGLAKDM 801: RGDSFLTTLP TVTPSLELDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)