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AT3G22120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.500
plasma membrane 0.500
ASURE: extracellular,plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : cell wall-plasma membrane linker protein
Curator
Summary (TAIR10)
cell wall-plasma membrane linker protein homolog (CWLP)
Computational
Description (TAIR10)
cell wall-plasma membrane linker protein (CWLP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22142.1); Has 335678 Blast hits to 95375 proteins in 3349 species: Archae - 1485; Bacteria - 89074; Metazoa - 114820; Fungi - 40290; Plants - 34776; Viruses - 9272; Other Eukaryotes - 45961 (source: NCBI BLink).
Protein Annotations
EMBL:AP001306EMBL:BT030017EMBL:CP002686EnsemblPlants:AT3G22120
EnsemblPlants:AT3G22120.1entrez:821775GeneID:821775Gramene:AT3G22120.1
hmmpanther:PTHR31731hmmpanther:PTHR31731:SF1InterPro:IPR016140InterPro:IPR027923
KEGG:ath:AT3G22120OMA:VYPPITPPfam:PF14547Pfscan:PS51257
Proteomes:UP000006548RefSeq:NP_188851.2SMR:Q9LIE9STRING:3702.AT3G22120.1
SUPFAM:SSF47699TAIR:AT3G22120tair10-symbols:CWLPTMHMM:TMhelix
UniGene:At.10710UniGene:At.48692UniGene:At.69354UniGene:At.71608
UniProt:Q9LIE9
Coordinates (TAIR10) chr3:-:7795283..7796287
Molecular Weight (calculated) 34671.30 Da
IEP (calculated) 10.50
GRAVY (calculated) -0.42
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSRSQNLSF LVLLLLGFVA VSYACDCTPP KPSPAPHKPP KHPVKPPKPP AVKPPKPPAV KPPTPKPPTV KPHPKPPTVK PHPKPPTVKP HPKPPTVKPP
101: HPKPPTKPHP HPKPPIVKPP TKPPPSTPKP PTKPPPSTPK PPTTKPPPST PKPPHHKPPP TPCPPPTPTP TPPVVTPPTP TPPVITPPTP TPPVVTPPTP
201: TPPVITPPTP TPPVITPPTP TPPVVTPPTP TPPVVTPPTP TPPTPIPETC PIDTLKLGAC VDVLGGLIHI GLGKSHAKAE CCPVLGGLLD LDAAVCLCTT
301: IKLKLLNIDL VLPIALELLL DCGKTPPSDF KCPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)