AT3G22104.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 844 Blast hits to 828 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 3; Plants - 786; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:7789814..7792179 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57388.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEACCSDLEV DINGEQTIFL NKQIICAYSG TLRKLLGKST SSSGNLKVIF NDFPGGAESF EFVSRFCYND GRVAVMPSNV VFLHCAAKFM EVTKVLEQTE 101: KCMEEIRYWA WPEVLLCLKQ CQEVETSPEV DSLAAKLMDA LVEKLCLTIE MSPSSAGSAC SPDSSLFRFS CDSKSTESFK NCSVRLTWWF DEVLVLSSGL 201: VEMFLKLMVL RKFDNLIISR FLFYYQKVKF CSASSHEKRK ILETIIDTLC VLDRSCVPCK SLFAVLRLAL GLNINKSCMN KLEVMIGHQL DQATLDNLLV 301: PSPSKSSHLY YVNLVLRFTK AFLDGARSGL QLKKVSSLID QYIAEVAPDP CLKPSKFLSL ITLVPDSARE SHEDIYRAID MYLEAHTGTT DGEKLNLIRT 401: LSYEKLSGES RAHISRNQKF QAIETLDEQQ QQQQQQQQQK QLILRMEKVE TSGENEKLKE HIEGIQWRVM ELERACLKMQ NQMEVIKKRS KSSSKGSNRS 501: LPKLCS |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)