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AT3G22104.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.670
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 844 Blast hits to 828 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 3; Plants - 786; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFTBeggNOG:ENOG4111G11EMBL:AB028622EMBL:AF360210EMBL:AP001306EMBL:AY040058EMBL:CP002686
EnsemblPlants:AT3G22104EnsemblPlants:AT3G22104.1entrez:821773GeneID:821773Genevisible:Q9C5J4GO:GO:0016567Gramene:AT3G22104.1
hmmpanther:PTHR32370hmmpanther:PTHR32370:SF25HOGENOM:HOG000241117InParanoid:Q9C5J4InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356
iPTMnet:Q9C5J4KEGG:ath:AT3G22104ncoils:CoilOMA:CCKHLARPaxDb:Q9C5J4Pfam:PF03000Pfam:Q9C5J4
Pfscan:PS50097Pfscan:PS51649PhylomeDB:Q9C5J4PRIDE:Q9C5J4PRO:PR:Q9C5J4PROSITE:PS50097PROSITE:PS51649
ProteinModelPortal:Q9C5J4Proteomes:UP000006548RefSeq:NP_188849.3SMART:SM00225SUPFAM:SSF54695TAIR:AT3G22104UniGene:At.19014
UniPathway:UPA00143UniProt:Q9C5J4
Coordinates (TAIR10) chr3:+:7789814..7792179
Molecular Weight (calculated) 57388.60 Da
IEP (calculated) 7.47
GRAVY (calculated) -0.18
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MEACCSDLEV DINGEQTIFL NKQIICAYSG TLRKLLGKST SSSGNLKVIF NDFPGGAESF EFVSRFCYND GRVAVMPSNV VFLHCAAKFM EVTKVLEQTE
101: KCMEEIRYWA WPEVLLCLKQ CQEVETSPEV DSLAAKLMDA LVEKLCLTIE MSPSSAGSAC SPDSSLFRFS CDSKSTESFK NCSVRLTWWF DEVLVLSSGL
201: VEMFLKLMVL RKFDNLIISR FLFYYQKVKF CSASSHEKRK ILETIIDTLC VLDRSCVPCK SLFAVLRLAL GLNINKSCMN KLEVMIGHQL DQATLDNLLV
301: PSPSKSSHLY YVNLVLRFTK AFLDGARSGL QLKKVSSLID QYIAEVAPDP CLKPSKFLSL ITLVPDSARE SHEDIYRAID MYLEAHTGTT DGEKLNLIRT
401: LSYEKLSGES RAHISRNQKF QAIETLDEQQ QQQQQQQQQK QLILRMEKVE TSGENEKLKE HIEGIQWRVM ELERACLKMQ NQMEVIKKRS KSSSKGSNRS
501: LPKLCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)