AT3G22070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proline-rich family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, inflorescence meristem, root, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 95281 Blast hits to 41469 proteins in 1893 species: Archae - 292; Bacteria - 17580; Metazoa - 30806; Fungi - 11508; Plants - 12978; Viruses - 3158; Other Eukaryotes - 18959 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7775530..7776066 | ||||||||||||||||||||
| Molecular Weight (calculated) | 18142.20 Da | ||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||
| Length | 178 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLCYVGKATK IFIFIVTVVF VIGLVVAFGV LRRHSHHCSG DYCSSSTDPS SSSSSSSSST SPFITPFPNP NPNPNPNPPV LGSSPPSPTD SSSSTSISPN 101: PPAPIVNPNP PPPSTPNPPP EFSPPPPDLD TTTAPPPPST DIPIPPPPPA PVSASPPLTP PSSVVTSPAP VHAKLVND |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)